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Slc15a5 solute carrier family 15, member 5 [ Mus musculus (house mouse) ]

Gene ID: 277898, updated on 11-Apr-2024

Summary

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Official Symbol
Slc15a5provided by MGI
Official Full Name
solute carrier family 15, member 5provided by MGI
Primary source
MGI:MGI:3607714
See related
Ensembl:ENSMUSG00000044378 AllianceGenome:MGI:3607714
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9830102E05Rik
Summary
Predicted to enable symporter activity. Predicted to be involved in transmembrane transport. Predicted to act upstream of or within peptide transport and protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC15A5 (solute carrier family 15 member 5). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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Location:
6 G1; 6 67.96 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (137960584..138056914, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (137983586..138079916, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4878 Neighboring gene deoxyribose-phosphate aldolase Neighboring gene STARR-seq mESC enhancer starr_17633 Neighboring gene predicted gene, 38552 Neighboring gene STARR-seq mESC enhancer starr_17634 Neighboring gene STARR-seq mESC enhancer starr_17635 Neighboring gene STARR-positive B cell enhancer mm9_chr6:138096406-138096707 Neighboring gene microsomal glutathione S-transferase 1 Neighboring gene predicted gene, 30213

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. In vivo and in vitro investigations of heterozygous nebulin knock-out mice disclose a mild skeletal muscle phenotype. Gineste C, et al. Neuromuscul Disord, 2013 Apr. PMID 23375831
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables symporter activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within peptide transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
solute carrier family 15 member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177787.4 → NP_808455.2  solute carrier family 15 member 5

    See identical proteins and their annotated locations for NP_808455.2

    Status: PROVISIONAL

    Source sequence(s)
    AC121849, AC132431
    UniProtKB/Swiss-Prot
    B2RUQ4, Q8CBB2
    Related
    ENSMUSP00000129239.2, ENSMUST00000171804.4
    Conserved Domains (1) summary
    cl21472
    Location:100 → 481
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    137960584..138056914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017321607.2 → XP_017177096.1  solute carrier family 15 member 5 isoform X1

    Related
    ENSMUST00000050132.10
    Conserved Domains (1) summary
    cl28910
    Location:1 → 398
    MFS; Major Facilitator Superfamily

  2. XM_017321608.2 → XP_017177097.1  solute carrier family 15 member 5 isoform X2

    Conserved Domains (1) summary
    cl28910
    Location:1 → 322
    MFS; Major Facilitator Superfamily
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8CBB2.2 GenPept UniProtKB/Swiss-Prot:Q8CBB2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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