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Ubfd1 ubiquitin family domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 28018, updated on 5-Mar-2024

Summary

Official Symbol
Ubfd1provided by MGI
Official Full Name
ubiquitin family domain containing 1provided by MGI
Primary source
MGI:MGI:107301
See related
Ensembl:ENSMUSG00000030870 AllianceGenome:MGI:107301
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ubph; D7Wsu105e; D7Wsu128e
Summary
Is expressed in embryo and extraembryonic component. Orthologous to human UBFD1 (ubiquitin family domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in limb E14.5 (RPKM 24.0), CNS E18 (RPKM 23.9) and 28 other tissues See more
Orthologs
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Genomic context

Location:
7 F2; 7 65.35 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (121666318..121681422)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (122067095..122082199)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene component of oligomeric golgi complex 7 Neighboring gene STARR-seq mESC enhancer starr_20069 Neighboring gene golgi associated, gamma adaptin ear containing, ARF binding protein 2 Neighboring gene STARR-positive B cell enhancer ABC_E10471 Neighboring gene glutamyl-tRNA synthetase 2, mitochondrial Neighboring gene STARR-positive B cell enhancer ABC_E3748 Neighboring gene NADH:ubiquinone oxidoreductase subunit AB1 Neighboring gene partner and localizer of BRCA2 Neighboring gene 60S ribosomal protein L27-like

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
ubiquitin domain-containing protein UBFD1
Names
ubiquitin-binding protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_138589.2NP_613055.2  ubiquitin domain-containing protein UBFD1

    See identical proteins and their annotated locations for NP_613055.2

    Status: PROVISIONAL

    Source sequence(s)
    AC124379, AK077395
    Consensus CDS
    CCDS21808.1
    UniProtKB/Swiss-Prot
    Q78JW9
    Related
    ENSMUSP00000033158.5, ENSMUST00000033158.6
    Conserved Domains (1) summary
    pfam00240
    Location:151215
    ubiquitin; Ubiquitin family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    121666318..121681422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006507914.4XP_006507977.3  ubiquitin domain-containing protein UBFD1 isoform X2

    Conserved Domains (1) summary
    cd17047
    Location:145214
    Ubl_UBFD1; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein UBFD1 and similar proteins
  2. XM_006507913.5XP_006507976.3  ubiquitin domain-containing protein UBFD1 isoform X1

    Conserved Domains (1) summary
    cd17047
    Location:145214
    Ubl_UBFD1; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein UBFD1 and similar proteins
  3. XM_006507915.5XP_006507978.3  ubiquitin domain-containing protein UBFD1 isoform X3

    Conserved Domains (1) summary
    cd17047
    Location:145214
    Ubl_UBFD1; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein UBFD1 and similar proteins