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D6Wsu163e DNA segment, Chr 6, Wayne State University 163, expressed [ Mus musculus (house mouse) ]

Gene ID: 28040, updated on 23-Jun-2021

Summary

Official Symbol
D6Wsu163eprovided by MGI
Official Full Name
DNA segment, Chr 6, Wayne State University 163, expressedprovided by MGI
Primary source
MGI:MGI:107893
See related
Ensembl:ENSMUSG00000030347
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C12orf4
Expression
Ubiquitous expression in CNS E18 (RPKM 7.4), placenta adult (RPKM 6.8) and 25 other tissues See more
Orthologs
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Genomic context

See D6Wsu163e in Genome Data Viewer
Location:
6 F3; 6 61.92 cM
Exon count:
14
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (126916929..126952667)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (126939966..126975704)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (126889984..126925722)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 Neighboring gene RAD51 associated protein 1 Neighboring gene metaxin 1 pseudogene Neighboring gene predicted gene 43124 Neighboring gene fibroblast growth factor 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in regulation of mast cell degranulation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of mast cell degranulation ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_138594.3NP_613060.1  protein C12orf4 homolog

    See identical proteins and their annotated locations for NP_613060.1

    Status: PROVISIONAL

    Source sequence(s)
    AK045541
    Consensus CDS
    CCDS20560.1
    UniProtKB/Swiss-Prot
    Q91YN0
    Related
    ENSMUSP00000032497.4, ENSMUST00000032497.7
    Conserved Domains (1) summary
    pfam10154
    Location:41546
    DUF2362; Uncharacterized conserved protein (DUF2362)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    126916929..126952667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006506217.3XP_006506280.1  protein C12orf4 homolog isoform X1

    See identical proteins and their annotated locations for XP_006506280.1

    UniProtKB/Swiss-Prot
    Q91YN0
    Conserved Domains (1) summary
    pfam10154
    Location:41546
    DUF2362; Uncharacterized conserved protein (DUF2362)
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