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C5orf60 chromosome 5 open reading frame 60 [ Homo sapiens (human) ]

Gene ID: 285679, updated on 23-Nov-2021

Summary

Official Symbol
C5orf60provided by HGNC
Official Full Name
chromosome 5 open reading frame 60provided by HGNC
Primary source
HGNC:HGNC:27753
See related
Ensembl:ENSG00000204661
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Annotation information
Note: This locus is considered non-coding by other groups due to a lack of experimental support for the protein, but NCBI annotates the protein because it meets minimal RefSeq quality criteria for representation. The coding status remains uncertain. [09 Mar 2015]
Expression
Restricted expression toward testis (RPKM 6.8) See more
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Genomic context

See C5orf60 in Genome Data Viewer
Location:
5q35.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (179641544..179645046, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (179068545..179072047, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene RUN and FYVE domain containing 1 Neighboring gene RUFY1 antisense RNA 1 Neighboring gene heterogeneous nuclear ribonucleoprotein H1 Neighboring gene Sharpr-MPRA regulatory region 11836 Neighboring gene chromosome 5 open reading frame 60-like Neighboring gene uncharacterized LOC105377763

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ35723

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131066.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC136604
    Related
    ENST00000625191.3

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    179641544..179645046 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_016107298.1 Reference GRCh38.p13 PATCHES

    Range
    413717..417220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001013718.1: Suppressed sequence

    Description
    NM_001013718.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
  2. NM_001142306.2: Suppressed sequence

    Description
    NM_001142306.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  3. NM_001305388.1: Suppressed sequence

    Description
    NM_001305388.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
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