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LY86-AS1 LY86 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 285780, updated on 15-Apr-2019

Summary

Official Symbol
LY86-AS1provided by HGNC
Official Full Name
LY86 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:26593
See related
Ensembl:ENSG00000216863
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LY86AS; LY86-AS
Expression
Biased expression in brain (RPKM 2.1), fat (RPKM 0.2) and 4 other tissues See more

Genomic context

See LY86-AS1 in Genome Data Viewer
Location:
6p25.1
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 6 NC_000006.12 (6346465..6622826, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (6346698..6623059, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374898 Neighboring gene neuritin 1 Neighboring gene coagulation factor XIII A chain Neighboring gene microRNA 7853 Neighboring gene microRNA 5683 Neighboring gene small nuclear RNA activating complex polypeptide 5 pseudogene 1 Neighboring gene calponin 3 pseudogene 1 Neighboring gene lymphocyte antigen 86 Neighboring gene uncharacterized LOC101928004 Neighboring gene uncharacterized LOC101928047 Neighboring gene uncharacterized LOC105374901

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

NHGRI GWAS Catalog

Description
A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity.
NHGRI GWA Catalog
Epidemiological and genome-wide association study of gastritis or gastric ulcer in korean populations.
NHGRI GWA Catalog
Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.
NHGRI GWA Catalog

General gene information

Markers

Other Names

  • LY86 antisense RNA (non-protein coding)
  • LY86 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ33708

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026970.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK091027, AL133326, BC031936, DA148042
    Related
    ENST00000429345.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p12 Primary Assembly

    Range
    6346465..6622826 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_173675.1: Suppressed sequence

    Description
    NM_173675.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
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