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4930438A08Rikl RIKEN cDNA 4930438A08 gene like [ Rattus norvegicus (Norway rat) ]

Gene ID: 287305, updated on 11-Apr-2024

Summary

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Official Symbol
4930438A08Riklprovided by RGD
Official Full Name
RIKEN cDNA 4930438A08 gene likeprovided by RGD
Primary source
RGD:1308564
See related
Ensembl:ENSRNOG00000043116 AllianceGenome:RGD:1308564
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308564
Summary
Predicted to enable L-amino-acid oxidase activity and polyamine oxidase activity. Predicted to be involved in cellular amino acid catabolic process. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 2.4), Lung (RPKM 2.0) and 5 other tissues See more
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Genomic context

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See 4930438A08Rikl in Genome Data Viewer
Location:
10q22
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (42960152..42977653)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (42459948..42477215)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (43715911..43733329)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA5 Neighboring gene immunity-related GTPase family M member 2 Neighboring gene uncharacterized LOC108352086 Neighboring gene transfer RNA glutamic acid (anticodon CUC) 5 Neighboring gene transfer RNA leucine (anticodon CAA) 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables L-amino-acid oxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables polyamine oxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in amino acid catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
L-amino-acid oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    42960152..42977653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006246412.5 → XP_006246474.1  L-amino-acid oxidase

    See identical proteins and their annotated locations for XP_006246474.1

    UniProtKB/TrEMBL
    F1LUP3
    Related
    ENSRNOP00000062069.2
    Conserved Domains (2) summary
    pfam01593
    Location:71 → 512
    Amino_oxidase; Flavin containing amine oxidoreductase
    pfam13450
    Location:66 → 111
    NAD_binding_8; NAD(P)-binding Rossmann-like domain
Nucleotide Protein Strain
Heading Accession and Version

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