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Taf15 TATA-box binding protein associated factor 15 [ Rattus norvegicus (Norway rat) ]

Gene ID: 287571, updated on 30-Sep-2021

Summary

Symbol
Taf15provided by RGD
Full Name
TATA-box binding protein associated factor 15provided by RGD
Primary source
RGD:1309595
See related
EnsemblRapid:ENSRNOG00000058393
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 140.1), Spleen (RPKM 107.2) and 9 other tissues See more
Orthologs
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Genomic context

See Taf15 in Genome Data Viewer
Location:
10q26
Exon count:
17
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (68272900..68304951)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (70689863..70721892)

Chromosome 10 - NC_051345.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein LOC689039 Neighboring gene uncharacterized LOC120095158 Neighboring gene matrix metallopeptidase 28 Neighboring gene HEAT repeat containing 9 Neighboring gene C-C motif chemokine ligand 5

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA binding ISO
Inferred from Sequence Orthology
more info
 
enables mRNA 3'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
enables transcription coregulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing ISO
Inferred from Sequence Orthology
more info
 
involved_in biological_process ND
No biological Data available
more info
 
acts_upstream_of_or_within gene expression ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within mRNA stabilization ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
NOT located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
TATA-binding protein-associated factor 2N
Names
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor
TATA-binding protein-associated factor 2N-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105824.2NP_001099294.2  TATA-binding protein-associated factor 2N

    Status: VALIDATED

    Source sequence(s)
    JACYVU010000220
    Conserved Domains (5) summary
    PTZ00110
    Location:469
    PTZ00110; helicase; Provisional
    sd00029
    Location:356377
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:352382
    zf-RanBP; Zn-finger in Ran binding protein and others
    cd12535
    Location:230315
    RRM_FUS_TAF15; RNA recognition motif (RRM) found in vertebrate fused in Ewing's sarcoma protein (FUS), TATA-binding protein-associated factor 15 (TAF15) and similar proteins
    NF033849
    Location:21158
    ser_rich_anae_1; serine-rich protein

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051345.1 Reference mRatBN7.2 Primary Assembly

    Range
    68272900..68304951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039085548.1XP_038941476.1  TATA-binding protein-associated factor 2N isoform X1

    Related
    ENSRNOP00000070879.2, ENSRNOT00000086987.2
    Conserved Domains (5) summary
    PTZ00110
    Location:469
    PTZ00110; helicase; Provisional
    sd00029
    Location:356377
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:352382
    zf-RanBP; Zn-finger in Ran binding protein and others
    cd12535
    Location:230315
    RRM_FUS_TAF15; RNA recognition motif (RRM) found in vertebrate fused in Ewing's sarcoma protein (FUS), TATA-binding protein-associated factor 15 (TAF15) and similar proteins
    NF033849
    Location:21158
    ser_rich_anae_1; serine-rich protein
  2. XM_039085549.1XP_038941477.1  TATA-binding protein-associated factor 2N isoform X2

    Conserved Domains (3) summary
    sd00029
    Location:192213
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:188218
    zf-RanBP; Zn-finger in Ran binding protein and others
    cd12535
    Location:66151
    RRM_FUS_TAF15; RNA recognition motif (RRM) found in vertebrate fused in Ewing's sarcoma protein (FUS), TATA-binding protein-associated factor 15 (TAF15) and similar proteins
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