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Swt1 SWT1 RNA endoribonuclease homolog [ Rattus norvegicus (Norway rat) ]

Gene ID: 289088, updated on 5-Mar-2024

Summary

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Official Symbol
Swt1provided by RGD
Official Full Name
SWT1 RNA endoribonuclease homologprovided by RGD
Primary source
RGD:1308695
See related
Ensembl:ENSRNOG00000032258 AllianceGenome:RGD:1308695
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308695
Summary
Predicted to be active in nucleus. Orthologous to human SWT1 (SWT1 RNA endoribonuclease homolog). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 140.5), Kidney (RPKM 97.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Swt1 in Genome Data Viewer
Location:
13q21
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (66002477..66059962, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (63452494..63509982, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (68728266..68785800, complement)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481568 Neighboring gene influenza virus NS1A binding protein Neighboring gene tRNA methyltransferase 1-like Neighboring gene ring finger protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
transcriptional protein SWT1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105960.1 → NP_001099430.1  transcriptional protein SWT1

    See identical proteins and their annotated locations for NP_001099430.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473958
    UniProtKB/TrEMBL
    A0A0G2K2J8, A6ICS4, D3ZHR0
    Related
    ENSRNOP00000049813.3, ENSRNOT00000044255.5
    Conserved Domains (1) summary
    cd09880
    Location:400 → 544
    PIN_Smg5-Smg6-like; PIN domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    66002477..66059962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039090452.2 → XP_038946380.1  transcriptional protein SWT1 isoform X2

    Conserved Domains (1) summary
    cd18727
    Location:58 → 197
    PIN_Swt1-like; VapC-like PIN domain of Saccharomyces cerevisiae Swt1p, human SWT1 and related proteins

  2. XM_017598703.3 → XP_017454192.1  transcriptional protein SWT1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K2J8

  3. XM_063272100.1 → XP_063128170.1  transcriptional protein SWT1 isoform X3

RNA

  1. XR_005492213.2 RNA Sequence

  2. XR_005492214.2 RNA Sequence

  3. XR_010056907.1 RNA Sequence

  4. XR_005492215.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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