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Slamf9 SLAM family member 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 289235, updated on 5-Mar-2024

Summary

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Official Symbol
Slamf9provided by RGD
Official Full Name
SLAM family member 9provided by RGD
Primary source
RGD:1305945
See related
Ensembl:ENSRNOG00000008045 AllianceGenome:RGD:1305945
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in T cell activation. Predicted to act upstream of or within defense response to bacterium; plasmacytoid dendritic cell chemotaxis; and plasmacytoid dendritic cell differentiation. Predicted to be located in cell surface. Predicted to be active in external side of plasma membrane. Orthologous to human SLAMF9 (SLAM family member 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 52.7), Thymus (RPKM 49.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
13q24
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (87474290..87477108)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (84941896..84944749)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (90836419..90856913, complement)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108352575 Neighboring gene uncharacterized LOC108353436 Neighboring gene immunoglobulin superfamily, member 9 Neighboring gene transgelin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in T cell activation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within defense response to bacterium ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within plasmacytoid dendritic cell chemotaxis ISO
Inferred from Sequence Orthology
more info
  
involved_in plasmacytoid dendritic cell cytokine production IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within plasmacytoid dendritic cell differentiation ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in cell surface ISO
Inferred from Sequence Orthology
more info
  
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
SLAM family member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105971.1 → NP_001099441.1  SLAM family member 9 precursor

    See identical proteins and their annotated locations for NP_001099441.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473985
    UniProtKB/TrEMBL
    A6JG58, D3ZLA6
    Related
    ENSRNOP00000010594.5, ENSRNOT00000010594.8
    Conserved Domains (3) summary
    cd00096
    Location:133 → 137
    Ig; Ig strand A [structural motif]
    cd16842
    Location:27 → 128
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family
    cl11960
    Location:133 → 213
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    87474290..87477108
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039090519.2 → XP_038946447.1  SLAM family member 9 isoform X1

    Conserved Domains (1) summary
    cd16842
    Location:27 → 128
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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