Format

Send to:

Choose Destination

Ankrd17 ankyrin repeat domain 17 [ Rattus norvegicus (Norway rat) ]

Gene ID: 289521, updated on 5-Jun-2021

Summary

Official Symbol
Ankrd17provided by RGD
Official Full Name
ankyrin repeat domain 17provided by RGD
Primary source
RGD:1562348
See related
Ensembl:ENSRNOG00000002940
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562348
Expression
Biased expression in Adrenal (RPKM 174.3), Thymus (RPKM 170.5) and 9 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Ankrd17 in Genome Data Viewer
Location:
14p22
Exon count:
35
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (17723239..17862625)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (19291025..19431521)

Chromosome 14 - NC_051349.1Genomic Context describing neighboring genes Neighboring gene albumin Neighboring gene similar to 60S ribosomal protein L8 Neighboring gene cytochrome c oxidase assembly factor COX18 Neighboring gene small nucleolar RNA SNORA17

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables chromatin binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in chromatin ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nuclear membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear membrane ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ankyrin repeat domain-containing protein 17
Names
ankyrin repeat domain protein 17

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105999.1NP_001099469.1  ankyrin repeat domain-containing protein 17

    See identical proteins and their annotated locations for NP_001099469.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474060
    UniProtKB/TrEMBL
    D4A0B4
    Related
    ENSRNOP00000059864.1, ENSRNOT00000068682.2
    Conserved Domains (8) summary
    TIGR02926
    Location:692768
    AhaH; ATP synthase archaeal, H subunit
    smart00248
    Location:9931021
    ANK; ankyrin repeats
    COG0666
    Location:9571183
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:283407
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam03938
    Location:681780
    OmpH; Outer membrane protein (OmpH-like)
    pfam12796
    Location:192281
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:290341
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:322351
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051349.1 Reference mRatBN7.2 Primary Assembly

    Range
    17723239..17862625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006250763.4XP_006250825.1  ankyrin repeat domain-containing protein 17 isoform X1

    Conserved Domains (10) summary
    TIGR02926
    Location:808884
    AhaH; ATP synthase archaeal, H subunit
    smart00248
    Location:11101138
    ANK; ankyrin repeats
    COG0195
    Location:17481795
    NusA; Transcription antitermination factor NusA, contains S1 and KH domains [Transcription]
    COG0666
    Location:10741300
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00105
    Location:17551817
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd00204
    Location:399523
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam03938
    Location:797896
    OmpH; Outer membrane protein (OmpH-like)
    pfam12796
    Location:308397
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:406457
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:438467
    ANK; ANK repeat [structural motif]
  2. XM_039091676.1XP_038947604.1  ankyrin repeat domain-containing protein 17 isoform X3

    Conserved Domains (8) summary
    PHA03095
    Location:11251431
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:21392480
    PHA03247; large tegument protein UL36; Provisional
    TIGR04523
    Location:783900
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    sd00045
    Location:438467
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:13481401
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:571662
    Ank_2; Ankyrin repeats (3 copies)
    cd22502
    Location:17531823
    KH-I_ANKRD17; type I K homology (KH) RNA-binding domain found in ankyrin repeat domain-containing protein 17 (ANKRD17) and similar proteins
    cl39094
    Location:11031141
    Ank_2; Ankyrin repeats (3 copies)
  3. XM_006250764.4XP_006250826.1  ankyrin repeat domain-containing protein 17 isoform X2

    Conserved Domains (10) summary
    TIGR02926
    Location:808884
    AhaH; ATP synthase archaeal, H subunit
    smart00248
    Location:11091137
    ANK; ankyrin repeats
    COG0195
    Location:17471794
    NusA; Transcription antitermination factor NusA, contains S1 and KH domains [Transcription]
    COG0666
    Location:10731299
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00105
    Location:17541816
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd00204
    Location:399523
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam03938
    Location:797896
    OmpH; Outer membrane protein (OmpH-like)
    pfam12796
    Location:308397
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:406457
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:438467
    ANK; ANK repeat [structural motif]
  4. XM_006250768.4XP_006250830.1  ankyrin repeat domain-containing protein 17 isoform X7

    Conserved Domains (7) summary
    COG0195
    Location:14721519
    NusA; Transcription antitermination factor NusA, contains S1 and KH domains [Transcription]
    COG0666
    Location:7981024
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00105
    Location:14791541
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd00204
    Location:399523
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:308397
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:406457
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:438467
    ANK; ANK repeat [structural motif]
  5. XM_006250769.4XP_006250831.1  ankyrin repeat domain-containing protein 17 isoform X8

    Conserved Domains (7) summary
    COG0195
    Location:14711518
    NusA; Transcription antitermination factor NusA, contains S1 and KH domains [Transcription]
    COG0666
    Location:7971023
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00105
    Location:14781540
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd00204
    Location:399523
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:308397
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:406457
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:438467
    ANK; ANK repeat [structural motif]
  6. XM_006250765.4XP_006250827.1  ankyrin repeat domain-containing protein 17 isoform X4

    Conserved Domains (10) summary
    TIGR02926
    Location:790866
    AhaH; ATP synthase archaeal, H subunit
    smart00248
    Location:10921120
    ANK; ankyrin repeats
    COG0195
    Location:17301777
    NusA; Transcription antitermination factor NusA, contains S1 and KH domains [Transcription]
    COG0666
    Location:10561282
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00105
    Location:17371799
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd00204
    Location:381505
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam03938
    Location:779878
    OmpH; Outer membrane protein (OmpH-like)
    pfam12796
    Location:290379
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:388439
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:420449
    ANK; ANK repeat [structural motif]
  7. XM_017599098.2XP_017454587.1  ankyrin repeat domain-containing protein 17 isoform X10

  8. XM_006250770.4XP_006250832.1  ankyrin repeat domain-containing protein 17 isoform X9

    Conserved Domains (7) summary
    COG0195
    Location:14541501
    NusA; Transcription antitermination factor NusA, contains S1 and KH domains [Transcription]
    COG0666
    Location:7801006
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00105
    Location:14611523
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd00204
    Location:381505
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:290379
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:388439
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:420449
    ANK; ANK repeat [structural motif]
  9. XM_008770011.3XP_008768233.1  ankyrin repeat domain-containing protein 17 isoform X6

    Conserved Domains (10) summary
    TIGR02926
    Location:692768
    AhaH; ATP synthase archaeal, H subunit
    smart00248
    Location:9931021
    ANK; ankyrin repeats
    COG0195
    Location:16311678
    NusA; Transcription antitermination factor NusA, contains S1 and KH domains [Transcription]
    COG0666
    Location:9571183
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00105
    Location:16381700
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd00204
    Location:283407
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam03938
    Location:681780
    OmpH; Outer membrane protein (OmpH-like)
    pfam12796
    Location:192281
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:290341
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:322351
    ANK; ANK repeat [structural motif]
  10. XM_006250766.4XP_006250828.1  ankyrin repeat domain-containing protein 17 isoform X5

    UniProtKB/TrEMBL
    A0A0G2JVW3
    Related
    ENSRNOP00000069642.1
    Conserved Domains (10) summary
    TIGR02926
    Location:692768
    AhaH; ATP synthase archaeal, H subunit
    smart00248
    Location:9941022
    ANK; ankyrin repeats
    COG0195
    Location:16321679
    NusA; Transcription antitermination factor NusA, contains S1 and KH domains [Transcription]
    COG0666
    Location:9581184
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00105
    Location:16391701
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd00204
    Location:283407
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam03938
    Location:681780
    OmpH; Outer membrane protein (OmpH-like)
    pfam12796
    Location:192281
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:290341
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:322351
    ANK; ANK repeat [structural motif]
Support Center