Format

Send to:

Choose Destination

Thoc3 THO complex 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 290519, updated on 6-May-2021

Summary

Official Symbol
Thoc3provided by RGD
Official Full Name
THO complex 3provided by RGD
Primary source
RGD:1311669
See related
Ensembl:ENSRNOG00000000104
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 171.9), Adrenal (RPKM 116.3) and 9 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Thoc3 in Genome Data Viewer
Location:
17p14
Exon count:
6
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (10143184..10152375)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (10676943..10686134)

Chromosome 17 - NC_051352.1Genomic Context describing neighboring genes Neighboring gene hypothetical LOC306766 Neighboring gene SUMO-interacting motifs containing 1 Neighboring gene similar to BC003940 protein Neighboring gene uncharacterized LOC120097924 Neighboring gene long non-coding RNA 012 Neighboring gene complexin 2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in mRNA export from nucleus ISO
Inferred from Sequence Orthology
more info
 
involved_in viral mRNA export from host cell nucleus ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
part_of THO complex part of transcription export complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of THO complex part of transcription export complex ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with chromosome, telomeric region ISO
Inferred from Sequence Orthology
more info
 
part_of transcription export complex ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106059.1NP_001099529.1  THO complex subunit 3

    See identical proteins and their annotated locations for NP_001099529.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474032
    UniProtKB/TrEMBL
    B5DEY5
    Related
    ENSRNOP00000000116.5, ENSRNOT00000000116.5
    Conserved Domains (2) summary
    cd00200
    Location:49290
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:5997
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051352.1 Reference mRatBN7.2 Primary Assembly

    Range
    10143184..10152375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center