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Tma16 translation machinery associated 16 homolog [ Rattus norvegicus (Norway rat) ]

Gene ID: 290686, updated on 5-Jun-2021

Summary

Official Symbol
Tma16provided by RGD
Official Full Name
translation machinery associated 16 homologprovided by RGD
Primary source
RGD:1305222
See related
Ensembl:ENSRNOG00000014188
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1305222
Expression
Biased expression in Adrenal (RPKM 32.7), Brain (RPKM 30.6) and 9 other tissues See more
Orthologs
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Genomic context

See Tma16 in Genome Data Viewer
Location:
16p14
Exon count:
9
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (23236686..23252706)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (24978429..24997286)

Chromosome 16 - NC_051351.1Genomic Context describing neighboring genes Neighboring gene U7 small nuclear RNA Neighboring gene transketolase-like 2 Neighboring gene membrane associated ring-CH-type finger 1 Neighboring gene 60S ribosomal protein L22-like 1 pseudogene Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
translation machinery-associated protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001169102.1NP_001162573.1  translation machinery-associated protein 16

    See identical proteins and their annotated locations for NP_001162573.1

    Status: VALIDATED

    Source sequence(s)
    BI294760, CF109688, JACYVU010000279
    UniProtKB/TrEMBL
    D4AAG0
    Conserved Domains (1) summary
    pfam11176
    Location:13161
    DUF2962; Protein of unknown function (DUF2962)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051351.1 Reference mRatBN7.2 Primary Assembly

    Range
    23236686..23252706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039094358.1XP_038950286.1  translation machinery-associated protein 16 isoform X2

    Conserved Domains (1) summary
    pfam11176
    Location:13129
    Tma16; Translation machinery-associated protein 16
  2. XM_017600038.2XP_017455527.1  translation machinery-associated protein 16 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JUY9
    Related
    ENSRNOP00000069283.1
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