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Slc35d2 solute carrier family 35 member D2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 290959, updated on 7-Aug-2021

Summary

Official Symbol
Slc35d2provided by RGD
Official Full Name
solute carrier family 35 member D2provided by RGD
Primary source
RGD:1309518
See related
Ensembl:ENSRNOG00000027229
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Liver (RPKM 61.1), Lung (RPKM 31.8) and 9 other tissues See more
Orthologs
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Genomic context

See Slc35d2 in Genome Data Viewer
Location:
17p14
Exon count:
13
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (987899..1019747)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (1618641..1649734, complement)

Chromosome 17 - NC_051352.1Genomic Context describing neighboring genes Neighboring gene hyaluronan binding protein 4 Neighboring gene zinc finger protein 367 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 3 Neighboring gene ERCC excision repair 6 like 2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables UDP-N-acetylgalactosamine transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables UDP-N-acetylglucosamine transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables UDP-glucuronic acid transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables antiporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in UDP-N-acetylgalactosamine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
involved_in UDP-N-acetylglucosamine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
involved_in UDP-glucuronic acid transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter
Names
solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106098.2NP_001099568.2  UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter

    Status: PROVISIONAL

    Source sequence(s)
    JACYVU010000284
    UniProtKB/TrEMBL
    D4A1T9
    Related
    ENSRNOP00000038617.4, ENSRNOT00000036212.6
    Conserved Domains (1) summary
    cl26744
    Location:16301
    TPT; Triose-phosphate Transporter family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051352.1 Reference mRatBN7.2 Primary Assembly

    Range
    987899..1019747
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006253493.4XP_006253555.1  UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter isoform X1

    Conserved Domains (2) summary
    pfam03151
    Location:16207
    TPT; Triose-phosphate Transporter family
    cl23754
    Location:102174
    EamA; EamA-like transporter family
  2. XM_039095438.1XP_038951366.1  UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter isoform X3

    Conserved Domains (1) summary
    cl26744
    Location:16186
    TPT; Triose-phosphate Transporter family
  3. XM_039095437.1XP_038951365.1  UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter isoform X2

    Conserved Domains (1) summary
    cl26744
    Location:17210
    TPT; Triose-phosphate Transporter family
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