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Ccdc86 coiled-coil domain containing 86 [ Rattus norvegicus (Norway rat) ]

Gene ID: 293738, updated on 30-Sep-2021

Summary

Official Symbol
Ccdc86provided by RGD
Official Full Name
coiled-coil domain containing 86provided by RGD
Primary source
RGD:1359280
See related
EnsemblRapid:ENSRNOG00000020925
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Adrenal (RPKM 150.6), Muscle (RPKM 102.3) and 9 other tissues See more
Orthologs
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Genomic context

See Ccdc86 in Genome Data Viewer
Location:
1q43
Exon count:
4
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (207590946..207596527, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (226996435..227002016, complement)

Chromosome 1 - NC_051336.1Genomic Context describing neighboring genes Neighboring gene zona pellucida glycoprotein 1 Neighboring gene prostaglandin D2 receptor 2 Neighboring gene membrane spanning 4-domains A10 Neighboring gene membrane spanning 4-domains A15

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC94720

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 
located_in chromosome ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
coiled-coil domain-containing protein 86
Names
cyclon
cytokine-induced protein with coiled-coil domain

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006974.2NP_001006975.1  coiled-coil domain-containing protein 86

    See identical proteins and their annotated locations for NP_001006975.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ501253
    UniProtKB/Swiss-Prot
    Q5XIB5
    Related
    ENSRNOP00000028405.4, ENSRNOT00000028405.7
    Conserved Domains (1) summary
    pfam03879
    Location:217303
    Cgr1; Cgr1 family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051336.1 Reference mRatBN7.2 Primary Assembly

    Range
    207590946..207596527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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