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Lhfpl2 LHFPL tetraspan subfamily member 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 294643, updated on 30-Sep-2021

Summary

Official Symbol
Lhfpl2provided by RGD
Official Full Name
LHFPL tetraspan subfamily member 2provided by RGD
Primary source
RGD:1309869
See related
EnsemblRapid:ENSRNOG00000011032
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 109.5), Heart (RPKM 64.7) and 9 other tissues See more
Orthologs
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Genomic context

See Lhfpl2 in Genome Data Viewer
Location:
2q12
Exon count:
8
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (25281771..25428128)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (23705491..23852021)

Chromosome 2 - NC_051337.1Genomic Context describing neighboring genes Neighboring gene arylsulfatase B Neighboring gene small nucleolar RNA SNORA24 Neighboring gene uncharacterized LOC120100667 Neighboring gene SNRPN upstream reading frame Neighboring gene similar to small nuclear ribonucleoparticle-associated protein Neighboring gene secretory carrier membrane protein 1 Neighboring gene adaptor related protein complex 3 subunit beta 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
LHFPL tetraspan subfamily member 2 protein
Names
lipoma HMGIC fusion partner-like 2 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106402.1NP_001099872.1  LHFPL tetraspan subfamily member 2 protein

    See identical proteins and their annotated locations for NP_001099872.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473955
    UniProtKB/TrEMBL
    D4A0X7
    Conserved Domains (1) summary
    pfam10242
    Location:9196
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051337.1 Reference mRatBN7.2 Primary Assembly

    Range
    25281771..25428128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039101911.1XP_038957839.1  LHFPL tetraspan subfamily member 2 protein isoform X1

    Conserved Domains (1) summary
    cl21598
    Location:9200
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  2. XM_017590688.2XP_017446177.1  LHFPL tetraspan subfamily member 2 protein isoform X2

    UniProtKB/TrEMBL
    D4A0X7
    Related
    ENSRNOP00000014795.5, ENSRNOT00000014795.8
    Conserved Domains (1) summary
    pfam10242
    Location:9196
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  3. XM_039101908.1XP_038957836.1  LHFPL tetraspan subfamily member 2 protein isoform X1

    Conserved Domains (1) summary
    cl21598
    Location:9200
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  4. XM_017590692.2XP_017446181.1  LHFPL tetraspan subfamily member 2 protein isoform X2

    UniProtKB/TrEMBL
    D4A0X7
    Conserved Domains (1) summary
    pfam10242
    Location:9196
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  5. XM_039101909.1XP_038957837.1  LHFPL tetraspan subfamily member 2 protein isoform X1

    Conserved Domains (1) summary
    cl21598
    Location:9200
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  6. XM_039101912.1XP_038957840.1  LHFPL tetraspan subfamily member 2 protein isoform X1

    Conserved Domains (1) summary
    cl21598
    Location:9200
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  7. XM_039101910.1XP_038957838.1  LHFPL tetraspan subfamily member 2 protein isoform X1

    Conserved Domains (1) summary
    cl21598
    Location:9200
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
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