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IE180 transcriptional regulator ICP4 [ Suid alphaherpesvirus 1 ]

Gene ID: 2952493, updated on 8-Sep-2020

Summary

Gene symbol
IE180
Gene description
transcriptional regulator ICP4
Locus tag
SuHV1_gp74
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Suid alphaherpesvirus 1 (strain: Composite of 6 strains, acronym: PRV, acronym: SuHV-1, nat-host: Sus scrofa)
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Varicellovirus
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Genomic context

Sequence:
NC_006151.1 (136798..141906)

NC_006151.1Genomic Context describing neighboring genes Neighboring gene envelope glycoprotein E Neighboring gene membrane protein US9 Neighboring gene virion protein US2 Neighboring gene regulatory protein ICP22

General gene information

Miscellaneous features

  • Loc: 136829-136829 experiment = approximation (+/- 1 nt) of transcriptional initation site from S1 mapping in strain Ka and primer extension in strain In-Fh , inference = ab initio prediction:NNPP:

polyA_site

  • Loc: 141906-141906 experiment = from S1 mapping in strain Ka and cDNA sequence in strain In-Fh

regulatory

  • Loc: 136798-136804 inference = ab initio prediction:TRANSFACFind: , regulatory_class = TATA_box
  • Loc: 141883-141888 experiment = consistent with mRNA size (sense unknown) in strain In-Fh , inference = ab initio prediction:PolyADQ: , regulatory_class = polyA_signal_sequence

General protein information

Preferred Names
transcriptional regulator ICP4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006151.1 Reference assembly

    Range
    136798..141906
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_068393.1 transcriptional regulator ICP4 [Suid alphaherpesvirus 1]

    See identical proteins and their annotated locations for YP_068393.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P33479
    UniProtKB/TrEMBL
    Q5PP75
    Conserved Domains (3) summary
    PHA03307
    Location:1281351
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam03584
    Location:482653
    Herpes_ICP4_N; Herpesvirus ICP4-like protein N-terminal region
    pfam03585
    Location:9731350
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region