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US8 envelope glycoprotein E [ Suid alphaherpesvirus 1 ]

Gene ID: 2952517, updated on 29-Jul-2022

Summary

Gene symbol
US8
Gene description
envelope glycoprotein E
Locus tag
SuHV1_gp70
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Suid alphaherpesvirus 1 (strain: Composite of 6 strains, acronym: PRV, acronym: SuHV-1, nat-host: Sus scrofa)
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Varicellovirus
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Genomic context

Sequence:
NC_006151.1 (123452..125732)

NC_006151.1Genomic Context describing neighboring genes Neighboring gene serine/threonine protein kinase US3 Neighboring gene envelope glycoprotein G Neighboring gene envelope glycoprotein D Neighboring gene envelope glycoprotein I Neighboring gene membrane protein US9 Neighboring gene virion protein US2 Neighboring gene regulatory protein ICP22 Neighboring gene transcriptional regulator ICP4

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Miscellaneous features

  • Loc: 123469-123469 experiment = approximation (+/- 20 nt) of transcriptional initation site from S1 mapping in strain In-Fh
  • Loc: 123484-123484 transcriptional initiation site inference = ab initio prediction:NNPP:
  • Loc: 125261-125261 transcriptional initiation site inference = ab initio prediction:NNPP:
  • Loc: 125726-125726 US2 experiment = approximation (+/- 10 nt) of transcriptional initation site from S1 mapping in strain NIA-3 , inference = ab initio prediction:NNPP:

polyA_site

  • Loc: 125732-125732 experiment = cDNA sequence in strain TNL

regulatory

  • Loc: 123452-123458 inference = ab initio prediction:TRANSFACFind: , regulatory_class = TATA_box
  • Loc: 125231-125237 inference = ab initio prediction:TRANSFACFind: , regulatory_class = TATA_box
  • Loc: 125697-125702 inference = ab initio prediction:PolyADQ: , regulatory_class = polyA_signal_sequence
  • Loc: 125697-125703 inference = ab initio prediction:TRANSFACFind: , regulatory_class = TATA_box

General protein information

Preferred Names
envelope glycoprotein E
YP_068389.1
  • gE family

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006151.1 Reference assembly

    Range
    123452..125732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_068389.1 envelope glycoprotein E [Suid alphaherpesvirus 1]

    See identical proteins and their annotated locations for YP_068389.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q5PP81, Q6UK11
    Conserved Domains (1) summary
    PHA03283
    Location:66576
    PHA03283; envelope glycoprotein E; Provisional