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Pxmp2 peroxisomal membrane protein 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 29533, updated on 30-Sep-2021

Summary

Official Symbol
Pxmp2provided by RGD
Official Full Name
peroxisomal membrane protein 2provided by RGD
Primary source
RGD:61812
See related
EnsemblRapid:ENSRNOG00000037446
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
T44
Summary
peroxisome integral membrane protein; N-terminal faces the cytosol [RGD, Feb 2006]
Expression
Biased expression in Liver (RPKM 1239.8), Heart (RPKM 306.0) and 4 other tissues See more
Orthologs
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Genomic context

See Pxmp2 in Genome Data Viewer
Location:
12q16
Exon count:
6
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (46394051..46404561)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (52452354..52462655)

Chromosome 12 - NC_051347.1Genomic Context describing neighboring genes Neighboring gene leucine rich colipase-like 1 Neighboring gene purinergic receptor P2X 2 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene DNA polymerase epsilon, catalytic subunit Neighboring gene PGAM family member 5, mitochondrial serine/threonine protein phosphatase Neighboring gene ankyrin repeat and LEM domain containing 2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of peroxisomal membrane TAS
Traceable Author Statement
more info
PubMed 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in peroxisomal membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
 
located_in peroxisomal membrane ISO
Inferred from Sequence Orthology
more info
 
located_in peroxisome IDA
Inferred from Direct Assay
more info
PubMed 
part_of protein-containing complex IEA
Inferred from Electronic Annotation
more info
 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
peroxisomal membrane protein 2
Names
22 kDa peroxisomal membrane protein
liver regeneration-related protein LRRG01
peroxisomal membrane protein 2, 22 kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031587.2NP_113775.2  peroxisomal membrane protein 2

    Status: VALIDATED

    Source sequence(s)
    JACYVU010000229
    Related
    ENSRNOP00000053518.2, ENSRNOT00000056680.4
    Conserved Domains (1) summary
    pfam04117
    Location:129190
    Mpv17_PMP22; Mpv17 / PMP22 family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051347.1 Reference mRatBN7.2 Primary Assembly

    Range
    46394051..46404561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039089297.1XP_038945225.1  peroxisomal membrane protein 2 isoform X1

    Conserved Domains (1) summary
    pfam04117
    Location:165223
    Mpv17_PMP22; Mpv17 / PMP22 family
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