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Arhgap20l1 Rho GTPase activating protein 20 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 295483, updated on 13-Apr-2024

Summary

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Official Symbol
Arhgap20l1provided by RGD
Official Full Name
Rho GTPase activating protein 20 like 1provided by RGD
Primary source
RGD:1306704
See related
Ensembl:ENSRNOG00000064712 AllianceGenome:RGD:1306704
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306704
Expression
Restricted expression toward (RPKM 595.6) See more
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Genomic context

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See Arhgap20l1 in Genome Data Viewer
Location:
2q42
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (215515868..215524194, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (212831343..212839635, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (147010399..147016261)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L7, pseudogene 8 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ribosomal protein S24, pseudogene 9 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
hypothetical LOC295483
Names
rho GTPase-activating protein 20-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402543.1 → NP_001389472.1  hypothetical LOC295483

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002
    UniProtKB/TrEMBL
    A0A8I5YCI0
    Related
    ENSRNOP00000077806.1, ENSRNOT00000108258.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    215515868..215524194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063281667.1 → XP_063137737.1  hypothetical LOC295483 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials