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Ndufaf1 NADH:ubiquinone oxidoreductase complex assembly factor 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 296086, updated on 14-Aug-2021

Summary

Official Symbol
Ndufaf1provided by RGD
Official Full Name
NADH:ubiquinone oxidoreductase complex assembly factor 1provided by RGD
Primary source
RGD:1306202
See related
Ensembl:ENSRNOG00000005006
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Cia30
Expression
Biased expression in Heart (RPKM 139.0), Muscle (RPKM 120.8) and 9 other tissues See more
Orthologs
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Genomic context

See Ndufaf1 in Genome Data Viewer
Location:
3q35
Exon count:
8
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (106639025..106650549, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (111458227..111469239, complement)

Chromosome 3 - NC_051338.1Genomic Context describing neighboring genes Neighboring gene OIP5 antisense RNA 1 Neighboring gene Opa interacting protein 5 Neighboring gene nucleolar and spindle associated protein 1 Neighboring gene 40S ribosomal protein S20 pseudogene Neighboring gene Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) Neighboring gene inositol-trisphosphate 3-kinase A

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables unfolded protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
complex I intermediate-associated protein 30, mitochondrial
Names
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1
NADH dehydrogenase (ubiquinone) complex I, assembly factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106500.1NP_001099970.1  complex I intermediate-associated protein 30, mitochondrial

    See identical proteins and their annotated locations for NP_001099970.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473949
    UniProtKB/TrEMBL
    F1LWG4
    Conserved Domains (1) summary
    pfam08547
    Location:126299
    CIA30; Complex I intermediate-associated protein 30 (CIA30)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051338.1 Reference mRatBN7.2 Primary Assembly

    Range
    106639025..106650549 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006234737.3XP_006234799.1  complex I intermediate-associated protein 30, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_006234799.1

    UniProtKB/TrEMBL
    F1LWG4
    Related
    ENSRNOP00000006874.6
    Conserved Domains (1) summary
    pfam08547
    Location:126299
    CIA30; Complex I intermediate-associated protein 30 (CIA30)
  2. XM_006234739.4XP_006234801.1  complex I intermediate-associated protein 30, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_006234801.1

    UniProtKB/TrEMBL
    F1LWG4
    Conserved Domains (1) summary
    pfam08547
    Location:126299
    CIA30; Complex I intermediate-associated protein 30 (CIA30)
  3. XM_006234741.4XP_006234803.1  complex I intermediate-associated protein 30, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_006234803.1

    UniProtKB/TrEMBL
    F1LWG4
    Conserved Domains (1) summary
    pfam08547
    Location:126299
    CIA30; Complex I intermediate-associated protein 30 (CIA30)
  4. XM_006234738.4XP_006234800.1  complex I intermediate-associated protein 30, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_006234800.1

    UniProtKB/TrEMBL
    F1LWG4
    Conserved Domains (1) summary
    pfam08547
    Location:126299
    CIA30; Complex I intermediate-associated protein 30 (CIA30)
  5. XM_006234740.4XP_006234802.1  complex I intermediate-associated protein 30, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_006234802.1

    UniProtKB/TrEMBL
    F1LWG4
    Conserved Domains (1) summary
    pfam08547
    Location:126299
    CIA30; Complex I intermediate-associated protein 30 (CIA30)
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