Ankef1 ankyrin repeat and EF-hand domain containing 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ankef1provided by RGD
Official Full Name: ankyrin repeat and EF-hand domain containing 1provided by RGD
Primary source: RGD:1304809
See related: Ensembl:ENSRNOG00000005792 AllianceGenome:RGD:1304809
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Ankrd5
Summary: Orthologous to human ANKEF1 (ankyrin repeat and EF-hand domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Testes (RPKM 73.9), Adrenal (RPKM 51.9) and 6 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 3q36

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (144300500..144335759)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (123847832..123883060)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (129462446..129536423)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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General protein information

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Preferred Names: ankyrin repeat and EF-hand domain-containing protein 1

Names: ankyrin repeat domain 5; ankyrin repeat domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001393870.1 → NP_001380799.1 ankyrin repeat and EF-hand domain-containing protein 1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000003

UniProtKB/TrEMBL

A6HQK0, D4A9E7

Related

ENSRNOP00000007893.4, ENSRNOT00000007893.6

Conserved Domains (4) summary

PHA02876
Location:161 → 589

PHA02876; ankyrin repeat protein; Provisional

sd00045
Location:527 → 555

ANK; ANK repeat [structural motif]

pfam13637
Location:501 → 545

Ank_4; Ankyrin repeats (many copies)

pfam12796
Location:529 → 621

Ank_2; Ankyrin repeats (3 copies)