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Svs1 seminal vesicle secretory protein 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 297081, updated on 6-May-2021

Summary

Official Symbol
Svs1provided by RGD
Official Full Name
seminal vesicle secretory protein 1provided by RGD
Primary source
RGD:708424
See related
Ensembl:ENSRNOG00000008714
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Low expression observed in reference dataset See more
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Genomic context

See Svs1 in Genome Data Viewer
Location:
4q24
Exon count:
5
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (77955478..77960376)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (78639672..78644570)

Chromosome 4 - NC_051339.1Genomic Context describing neighboring genes Neighboring gene diamine oxidase-like protein 2 Neighboring gene hypothetical LOC100363435 Neighboring gene uncharacterized LOC102546557 Neighboring gene glycoprotein nmb

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables copper ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables diamine oxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables primary amine oxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables quinone binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in amine metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in response to antibiotic IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
seminal vesicle secretory protein 1
Names
androgen-responsive protein pSv-2
seminal vesicle secretion 1
seminal vesicle-secreted protein I

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199095.1NP_954526.1  seminal vesicle secretory protein 1 precursor

    See identical proteins and their annotated locations for NP_954526.1

    Status: PROVISIONAL

    Source sequence(s)
    BK001315
    UniProtKB/TrEMBL
    Q6IMK4
    Related
    ENSRNOP00000011588.2, ENSRNOT00000011588.2
    Conserved Domains (3) summary
    pfam01179
    Location:506903
    Cu_amine_oxid; Copper amine oxidase, enzyme domain
    pfam02727
    Location:44130
    Cu_amine_oxidN2; Copper amine oxidase, N2 domain
    pfam02728
    Location:146246
    Cu_amine_oxidN3; Copper amine oxidase, N3 domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051339.1 Reference mRatBN7.2 Primary Assembly

    Range
    77955478..77960376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006236459.1XP_006236521.1  seminal vesicle secretory protein 1 isoform X1

    Conserved Domains (3) summary
    pfam01179
    Location:420817
    Cu_amine_oxid; Copper amine oxidase, enzyme domain
    pfam02727
    Location:44130
    Cu_amine_oxidN2; Copper amine oxidase, N2 domain
    pfam02728
    Location:146246
    Cu_amine_oxidN3; Copper amine oxidase, N3 domain
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