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Malsu1 mitochondrial assembly of ribosomal large subunit 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 297082, updated on 22-Aug-2021

Summary

Official Symbol
Malsu1provided by RGD
Official Full Name
mitochondrial assembly of ribosomal large subunit 1provided by RGD
Primary source
RGD:1306936
See related
Ensembl:ENSRNOG00000009035
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306936
Expression
Biased expression in Muscle (RPKM 145.5), Heart (RPKM 142.7) and 9 other tissues See more
Orthologs
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Genomic context

See Malsu1 in Genome Data Viewer
Location:
4q24
Exon count:
4
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (78051090..78059913)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (78735279..78744102)

Chromosome 4 - NC_051339.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102546557 Neighboring gene glycoprotein nmb Neighboring gene insulin-like growth factor 2 mRNA binding protein 3 Neighboring gene transformer 2 alpha homolog

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables ribosomal large subunit binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in negative regulation of mitochondrial translation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of ribosome biogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in negative regulation of translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in ribosomal large subunit biogenesis ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
part_of mitochondrial large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
mitochondrial assembly of ribosomal large subunit protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106593.1NP_001100063.1  mitochondrial assembly of ribosomal large subunit protein 1

    See identical proteins and their annotated locations for NP_001100063.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474011
    UniProtKB/TrEMBL
    D3ZZ37
    Related
    ENSRNOP00000011971.3, ENSRNOT00000011970.4
    Conserved Domains (1) summary
    pfam02410
    Location:90189
    RsfS; Ribosomal silencing factor during starvation

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051339.1 Reference mRatBN7.2 Primary Assembly

    Range
    78051090..78059913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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