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Stra6l STRA6-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 298077, updated on 29-Feb-2024

Summary

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Official Symbol
Stra6lprovided by RGD
Official Full Name
STRA6-likeprovided by RGD
Primary source
RGD:1305807
See related
Ensembl:ENSRNOG00000010497 AllianceGenome:RGD:1305807
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1305807
Summary
Predicted to be involved in vitamin A import. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Liver (RPKM 197.0), Spleen (RPKM 21.8) and 1 other tissue See more
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Genomic context

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Location:
5q22
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (64902552..64944216)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (60106949..60147546)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (61425451..61467653)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 1 family, member B1 Neighboring gene insulin-like growth factor binding protein-like 1 Neighboring gene coiled-coil domain containing 180 Neighboring gene uncharacterized LOC120102865 Neighboring gene uncharacterized LOC120102866 Neighboring gene tudor domain containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC114401

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables retinol transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within establishment of localization in cell ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within retinol transport ISO
Inferred from Sequence Orthology
more info
  
involved_in vitamin A import into cell IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within vitamin A import into cell ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
STRA6-like
Names
Stimulated by retinoic acid gene 6 protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025276.1 → NP_001020447.1  STRA6-like

    See identical proteins and their annotated locations for NP_001020447.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097368
    UniProtKB/TrEMBL
    A0A8I5ZVU0, A6IJA5, F7EQ25, Q4QR84
    Related
    ENSRNOP00000081815.1, ENSRNOT00000112739.1
    Conserved Domains (1) summary
    pfam14752
    Location:13 → 602
    RBP_receptor; Retinol binding protein receptor

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    64902552..64944216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006238038.5 → XP_006238100.1  STRA6-like isoform X1

    UniProtKB/TrEMBL
    F7EQ25
    Conserved Domains (1) summary
    pfam14752
    Location:13 → 559
    RBP_receptor; Retinol binding protein receptor
Nucleotide Protein Strain
Heading Accession and Version

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