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Slc31a2 solute carrier family 31 member 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 298091, updated on 6-May-2021

Summary

Official Symbol
Slc31a2provided by RGD
Official Full Name
solute carrier family 31 member 2provided by RGD
Primary source
RGD:1307963
See related
Ensembl:ENSRNOG00000013631
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 165.6), Lung (RPKM 67.0) and 9 other tissues See more
Orthologs
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Genomic context

See Slc31a2 in Genome Data Viewer
Location:
5q24
Exon count:
4
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (75738008..75748542)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (78120606..78131111)

Chromosome 5 - NC_051340.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120103073 Neighboring gene uncharacterized LOC108350981 Neighboring gene FKBP prolyl isomerase family member 15 Neighboring gene solute carrier family 31 member 1 Neighboring gene cell division cycle 26

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC124776

Gene Ontology Provided by RGD

Function Evidence Code Pubs
NOT enables copper ion transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in late endosome ISO
Inferred from Sequence Orthology
more info
 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in recycling endosome ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
probable low affinity copper uptake protein 2
Names
solute carrier family 31 (copper transporter), member 2
solute carrier family 31 (copper transporters), member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033693.2NP_001028865.2  probable low affinity copper uptake protein 2

    See identical proteins and their annotated locations for NP_001028865.2

    Status: VALIDATED

    Source sequence(s)
    JACYVU010000161
    UniProtKB/TrEMBL
    D4AAE7
    Related
    ENSRNOP00000019379.5, ENSRNOT00000019379.7
    Conserved Domains (1) summary
    pfam04145
    Location:3135
    Ctr; Ctr copper transporter family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051340.1 Reference mRatBN7.2 Primary Assembly

    Range
    75738008..75748542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039109465.1XP_038965393.1  probable low affinity copper uptake protein 2 isoform X1

    Conserved Domains (1) summary
    pfam04145
    Location:15110
    Ctr; Ctr copper transporter family
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