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Polr3h RNA polymerase III subunit H [ Rattus norvegicus (Norway rat) ]

Gene ID: 300088, updated on 30-Sep-2021

Summary

Official Symbol
Polr3hprovided by RGD
Official Full Name
RNA polymerase III subunit Hprovided by RGD
Primary source
RGD:1305889
See related
EnsemblRapid:ENSRNOG00000004471
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 222.9), Spleen (RPKM 196.8) and 9 other tissues See more
Orthologs
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Genomic context

See Polr3h in Genome Data Viewer
Location:
7q34
Exon count:
7
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (113429434..113439743, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (123146248..123156558, complement)

Chromosome 7 - NC_051342.1Genomic Context describing neighboring genes Neighboring gene PHD finger protein 5A Neighboring gene aconitase 2 Neighboring gene uncharacterized LOC102549144 Neighboring gene small nucleolar RNA SNORA44 Neighboring gene cold shock domain containing C2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-directed 5'-3' RNA polymerase activity ISO
Inferred from Sequence Orthology
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in nucleobase-containing compound metabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in transcription by RNA polymerase III ISO
Inferred from Sequence Orthology
more info
 
involved_in transcription initiation from RNA polymerase III promoter IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of RNA polymerase III complex ISO
Inferred from Sequence Orthology
more info
 
is_active_in cellular_component ND
No biological Data available
more info
 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 
located_in centrosome ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
DNA-directed RNA polymerase III subunit RPC8
Names
polymerase (RNA) III (DNA directed) polypeptide H
polymerase (RNA) III subunit H
NP_001120767.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127295.2NP_001120767.1  DNA-directed RNA polymerase III subunit RPC8

    See identical proteins and their annotated locations for NP_001120767.1

    Status: PROVISIONAL

    Source sequence(s)
    BC167088
    UniProtKB/TrEMBL
    B2RZB0
    Related
    ENSRNOP00000089935.1, ENSRNOT00000098323.1
    Conserved Domains (2) summary
    cd04330
    Location:281
    RNAP_III_Rpc25_N; Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP ...
    pfam08292
    Location:83201
    RNA_pol_Rbc25; RNA polymerase III subunit Rpc25

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051342.1 Reference mRatBN7.2 Primary Assembly

    Range
    113429434..113439743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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