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Abhd14b abhydrolase domain containing 14b [ Rattus norvegicus (Norway rat) ]

Gene ID: 300983, updated on 2-Oct-2021

Summary

Official Symbol
Abhd14bprovided by RGD
Official Full Name
abhydrolase domain containing 14bprovided by RGD
Primary source
RGD:1359649
See related
EnsemblRapid:ENSRNOG00000012073
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 818.1), Liver (RPKM 725.0) and 8 other tissues See more
Orthologs
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Genomic context

See Abhd14b in Genome Data Viewer
Location:
8q32
Exon count:
5
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (107087157..107092122)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (115149638..115154556)

Chromosome 8 - NC_051343.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L29 Neighboring gene aminoacylase 1 Neighboring gene abhydrolase domain containing 14A Neighboring gene poly(rC) binding protein 4 Neighboring gene G protein-coupled receptor 62

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC93766

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables hydrolase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
protein ABHD14B
Names
abhydrolase domain-containing protein 14B
alpha/beta hydrolase domain-containing protein 14B
NP_001007665.1
XP_006243786.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007664.1NP_001007665.1  protein ABHD14B

    See identical proteins and their annotated locations for NP_001007665.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076385
    UniProtKB/Swiss-Prot
    Q6DGG1
    Related
    ENSRNOP00000016504.4, ENSRNOT00000016504.8
    Conserved Domains (2) summary
    COG0596
    Location:10209
    MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
    pfam12695
    Location:35188
    Abhydrolase_5; Alpha/beta hydrolase family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051343.1 Reference mRatBN7.2 Primary Assembly

    Range
    107087157..107092122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006243724.3XP_006243786.1  protein ABHD14B isoform X1

    See identical proteins and their annotated locations for XP_006243786.1

    UniProtKB/Swiss-Prot
    Q6DGG1
    Conserved Domains (2) summary
    COG0596
    Location:10209
    MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
    pfam12695
    Location:35188
    Abhydrolase_5; Alpha/beta hydrolase family
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