epd ependymin [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: epdprovided by ZNC
Official Full Name: ependyminprovided by ZNC
Primary source: ZFIN:ZDB-GENE-980526-111
See related: Ensembl:ENSDARG00000103498 AllianceGenome:ZFIN:ZDB-GENE-980526-111
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: epn; fj34b05; wu:fj34b05; zgc:109854
Summary: Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell-matrix adhesion. Predicted to be located in extracellular region. Predicted to be active in lysosome. Is expressed in brain and chondrocranium. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 5

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (37837245..37839310)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (37237092..37239157)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

ependymin in control of aggressive behaviour
Title: Molecular correlates of social dominance: a novel role for ependymin in aggression.

Submit: New GeneRIF Correction

General gene information

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Markers

epd (e-PCR), detects polymorphism
- UniSTS:186953

fj30g01.y1 (e-PCR)
- UniSTS:199024

fj34b05.x1 (e-PCR)
- UniSTS:199142

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell-matrix adhesion	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info
is_active_in lysosome	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: ependymin

Names: etID309817.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.