Slfn5 schlafen family member 5 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Slfn5provided by RGD
Official Full Name: schlafen family member 5provided by RGD
Primary source: RGD:1312025
See related: Ensembl:ENSRNOG00000021719 AllianceGenome:RGD:1312025
Gene type: protein coding
RefSeq status: MODEL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable ATP binding activity. Predicted to be located in nucleus. Orthologous to human SLFN5 (schlafen family member 5). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Spleen (RPKM 462.8), Lung (RPKM 412.7) and 9 other tissues See more
Orthologs: human all
NEW: Try the new Gene table
Try the new Transcript table

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	10	NC_086028.1 (68378440..68392515)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	10	NC_051345.1 (67881068..67895013)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	10	NC_005109.4 (70298094..70312062)

Chromosome 10 - NC_086028.1 Genomic Context describing neighboring genes

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Submit: New GeneRIF Correction

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISO Inferred from Sequence Orthology more info

NEW Try the new Transcript table

The following sections contain reference sequences that belong to a specific genome build. Explain

XM_063270130.1 → XP_063126200.1 schlafen family member 5

UniProtKB/TrEMBL

A0A096MK60
XM_220775.9 → XP_220775.3 schlafen family member 5

See identical proteins and their annotated locations for XP_220775.3

UniProtKB/TrEMBL

A0A096MK60

Related

ENSRNOP00000068390.2

Conserved Domains (4) summary

PHA02782
Location:36 → 327

PHA02782; hypothetical protein; Provisional

pfam04326
Location:187 → 295

AlbA_2; Putative DNA-binding domain

cl21455
Location:569 → 668

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

cl22977
Location:832 → 880

UvrD_C_2; UvrD-like helicase C-terminal domain