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Otud4 OTU deubiquitinase 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 307774, updated on 30-Sep-2021

Summary

Official Symbol
Otud4provided by RGD
Official Full Name
OTU deubiquitinase 4provided by RGD
Primary source
RGD:1305606
See related
EnsemblRapid:ENSRNOG00000018477
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1305606
Expression
Biased expression in Muscle (RPKM 187.8), Thymus (RPKM 179.2) and 9 other tissues See more
Orthologs
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Genomic context

See Otud4 in Genome Data Viewer
Location:
19q11
Exon count:
21
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (28236713..28279815, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (31895753..31942509, complement)

Chromosome 19 - NC_051354.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein G pseudogene Neighboring gene uncharacterized LOC120098633 Neighboring gene ATP binding cassette subfamily E member 1 Neighboring gene similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (38 kDa BFA-dependent ADP-ribosylation substrate) (BARS-38) Neighboring gene uncharacterized LOC102549652

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables Lys63-specific deubiquitinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables Lys63-specific deubiquitinase activity ISO
Inferred from Sequence Orthology
more info
 
enables molecular adaptor activity ISO
Inferred from Sequence Orthology
more info
 
enables thiol-dependent deubiquitinase IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables thiol-dependent deubiquitinase ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
OTU domain-containing protein 4
Names
OTU domain containing 4
NP_001178629.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191700.1NP_001178629.1  OTU domain-containing protein 4

    Status: PROVISIONAL

    Source sequence(s)
    AABR07043612
    UniProtKB/TrEMBL
    F1M7Q7
    Related
    ENSRNOP00000024924.6, ENSRNOT00000024924.7
    Conserved Domains (2) summary
    pfam12293
    Location:556642
    T4BSS_DotH_IcmK; Putative outer membrane core complex of type IVb secretion
    cl19932
    Location:42121
    OTU; OTU-like cysteine protease

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051354.1 Reference mRatBN7.2 Primary Assembly

    Range
    28236713..28279815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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