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Ms4a1 membrane spanning 4-domains A1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 309217, updated on 30-Sep-2021

Summary

Official Symbol
Ms4a1provided by RGD
Official Full Name
membrane spanning 4-domains A1provided by RGD
Primary source
RGD:1311999
See related
EnsemblRapid:ENSRNOG00000020945
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Spleen (RPKM 916.9) and Thymus (RPKM 119.5) See more
Orthologs
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Genomic context

See Ms4a1 in Genome Data Viewer
Location:
1q43
Exon count:
8
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (207906370..207927028, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (227429241..227441492, complement)

Chromosome 1 - NC_051336.1Genomic Context describing neighboring genes Neighboring gene membrane spanning 4-domains A13, pseudogene 1 Neighboring gene uncharacterized LOC120093141 Neighboring gene 60S ribosomal protein L6 pseudogene Neighboring gene membrane spanning 4-domains A12 Neighboring gene membrane spanning 4-domains A5 Neighboring gene membrane spanning 4-domains A14

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables epidermal growth factor receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables immunoglobulin binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in B cell activation ISO
Inferred from Sequence Orthology
more info
 
involved_in B cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in B cell receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in biological_process ND
No biological Data available
more info
 
involved_in calcium ion import into cytosol ISO
Inferred from Sequence Orthology
more info
 
involved_in protein tetramerization ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within response to bacterium ISO
Inferred from Sequence Orthology
more info
 
involved_in store-operated calcium entry ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cell surface ISO
Inferred from Sequence Orthology
more info
 
is_active_in cellular_component ND
No biological Data available
more info
 
located_in external side of plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane raft ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
B-lymphocyte antigen CD20
Names
membrane-spanning 4-domains, subfamily A, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107578.1NP_001101048.1  B-lymphocyte antigen CD20

    See identical proteins and their annotated locations for NP_001101048.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473953
    Conserved Domains (1) summary
    pfam04103
    Location:51216
    CD20; CD20-like family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051336.1 Reference mRatBN7.2 Primary Assembly

    Range
    207906370..207927028 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039079860.1XP_038935788.1  B-lymphocyte antigen CD20 isoform X1

    Conserved Domains (1) summary
    pfam04103
    Location:51217
    CD20; CD20-like family
  2. XM_006231089.4XP_006231151.1  B-lymphocyte antigen CD20 isoform X1

    UniProtKB/TrEMBL
    D4A4Y3
    Related
    ENSRNOP00000028433.6, ENSRNOT00000028433.8
    Conserved Domains (1) summary
    pfam04103
    Location:51217
    CD20; CD20-like family
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