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Slc46a2 solute carrier family 46, member 2 [ Mus musculus (house mouse) ]

Gene ID: 30936, updated on 23-Jun-2021

Summary

Official Symbol
Slc46a2provided by MGI
Official Full Name
solute carrier family 46, member 2provided by MGI
Primary source
MGI:MGI:1353616
See related
Ensembl:ENSMUSG00000028386
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Tsc; Ly11; Ly110; Tscot; TSO-1C; TSO-1C12; 5430429N04Rik
Expression
Biased expression in thymus adult (RPKM 10.5), genital fat pad adult (RPKM 6.6) and 3 other tissues See more
Orthologs
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Genomic context

See Slc46a2 in Genome Data Viewer
Location:
4 B3; 4 32.81 cM
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (59905899..59915056, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (59905899..59915056, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (59918771..59927928, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene INTS3 and NABP interacting protein Neighboring gene sorting nexin family member 30 Neighboring gene sorting nexin 2 pseudogene Neighboring gene major urinary protein 4 Neighboring gene major urinary protein 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cell surface IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
thymic stromal cotransporter protein
Names
putative thymic stromal co-transporter TSCOT

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021053.4NP_066395.3  thymic stromal cotransporter protein

    See identical proteins and their annotated locations for NP_066395.3

    Status: VALIDATED

    Source sequence(s)
    AK040063, AL831738
    Consensus CDS
    CCDS18227.1
    UniProtKB/Swiss-Prot
    Q8CA03
    Related
    ENSMUSP00000030081.2, ENSMUST00000030081.2
    Conserved Domains (2) summary
    cd06174
    Location:86455
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    pfam07690
    Location:88422
    MFS_1; Major Facilitator Superfamily

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    59905899..59915056 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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