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Zfp354c zinc finger protein 354C [ Mus musculus (house mouse) ]

Gene ID: 30944, updated on 23-Jun-2021

Summary

Official Symbol
Zfp354cprovided by MGI
Official Full Name
zinc finger protein 354Cprovided by MGI
Primary source
MGI:MGI:1353621
See related
Ensembl:ENSMUSG00000044807
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AJ1; Kid; AJ18; Kid3; Tcf17l2; Znf354c; AW743325; mKIAA4218; 5330421P20Rik
Expression
Biased expression in CNS E18 (RPKM 9.9), limb E14.5 (RPKM 9.5) and 11 other tissues See more
Orthologs
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Genomic context

See Zfp354c in Genome Data Viewer
Location:
11 B1.3; 11 30.93 cM
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (50701912..50718558, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (50811085..50827731, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (50624587..50641233, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2 Neighboring gene predicted gene 12199 Neighboring gene predicted gene, 51860 Neighboring gene zinc finger protein 879 Neighboring gene glutamate receptor, metabotropic 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Clone Names

  • KIAA4218

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
zinc finger protein 354C
Names
kidney, ischemia, and developmentally-regulated protein 3
transcription factor 17-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013922.4NP_038950.3  zinc finger protein 354C

    See identical proteins and their annotated locations for NP_038950.3

    Status: VALIDATED

    Source sequence(s)
    AL627215, BC079908
    Consensus CDS
    CCDS24637.1
    UniProtKB/Swiss-Prot
    Q571J5
    Related
    ENSMUSP00000104763.3, ENSMUST00000109135.9
    Conserved Domains (5) summary
    smart00349
    Location:1474
    KRAB; krueppel associated box
    COG5048
    Location:204543
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:248268
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1453
    KRAB; KRAB box
    pfam13465
    Location:456481
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    50701912..50718558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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