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RT1-CE12 RT1 class I, locus CE12 [ Rattus norvegicus (Norway rat) ]

Gene ID: 309600, updated on 30-Mar-2024

Summary

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Symbol
RT1-CE12provided by RGD
Full Name
RT1 class I, locus CE12provided by RGD
Primary source
RGD:1359103
See related
AllianceGenome:RGD:1359103
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RT1.46
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Genomic context

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See RT1-CE12 in Genome Data Viewer
Location:
20p12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (3290831..3347349, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (3338907..3342547, complement)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108353253 Neighboring gene Cdk2ap1-ps8 pseudogene Neighboring gene RT1 class I, locus CE15 Neighboring gene uncharacterized LOC120098828 Neighboring gene LOC224733l-9 pseudogene Neighboring gene Cdk2ap1-ps7 pseudogene Neighboring gene RT1 class I, locus CE14 Neighboring gene RT1 class I, locus CE13 Neighboring gene uncharacterized LOC120098829 Neighboring gene Cdk2ap1-ps6 pseudogene Neighboring gene Sacm2l-ps7 pseudogene Neighboring gene Sacm2l-ps6 pseudogene Neighboring gene Sacm2l-ps5 pseudogene Neighboring gene RT1 class I, locus CE11 Neighboring gene uncharacterized LOC120098832 Neighboring gene LOC224733l-8 pseudogene Neighboring gene Cdk2ap1-ps5 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of five distinct cDNA clones encoding for class I RT1 antigens. Mauxion F, et al. Immunogenetics, 1989. PMID 2731966
  2. Identification of MHC Class Ib Ligands for Stimulatory and Inhibitory Ly49 Receptors and Induction of Potent NK Cell Alloresponses in Rats. Dai KZ, et al. J Immunol, 2018 Apr 15. PMID 29531166, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
RT1 class I, locus CE12
Names
MHC RT44 protein
MHC class I antigen
RT1 class I histocompatibility antigen, AA alpha chain-like
RT1 class I, CE12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008835.2 → NP_001008835.1  RT1 class I, locus CE12 precursor

    See identical proteins and their annotated locations for NP_001008835.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000020
    UniProtKB/TrEMBL
    A0A2P1NRX5, Q6MG32
    Conserved Domains (3) summary
    cd07698
    Location:207 → 299
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam00129
    Location:25 → 203
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    pfam06623
    Location:344 → 370
    MHC_I_C; MHC_I C-terminus

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    3290831..3347349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063279095.1 → XP_063135165.1  RT1 class I, locus CE12 isoform X2

  2. XM_063279094.1 → XP_063135164.1  RT1 class I, locus CE12 isoform X1

  3. XM_063279097.1 → XP_063135167.1  RT1 class I, locus CE12 isoform X4

  4. XM_063279096.1 → XP_063135166.1  RT1 class I, locus CE12 isoform X3

  5. XM_063279098.1 → XP_063135168.1  RT1 class I, locus CE12 isoform X5

  6. XM_063279099.1 → XP_063135169.1  RT1 class I, locus CE12 isoform X5

RNA

  1. XR_010060667.1 RNA Sequence

  2. XR_010060666.1 RNA Sequence

  3. XR_010060664.1 RNA Sequence

  4. XR_010060665.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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