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Olfml3 olfactomedin-like 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 310743, updated on 5-Mar-2024

Summary

Official Symbol
Olfml3provided by RGD
Official Full Name
olfactomedin-like 3provided by RGD
Primary source
RGD:1311106
See related
Ensembl:ENSRNOG00000019211 AllianceGenome:RGD:1311106
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in extracellular region. Orthologous to human OLFML3 (olfactomedin like 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Uterus (RPKM 282.1), Lung (RPKM 266.0) and 9 other tissues See more
Orthologs
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Genomic context

Location:
2q34
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (193932665..193935494, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (191244221..191247050, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (206219419..206222248, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102546891 Neighboring gene uncharacterized LOC134485944 Neighboring gene uncharacterized LOC134485758 Neighboring gene uncharacterized LOC102547265 Neighboring gene homeodomain interacting protein kinase 1 Neighboring gene uncharacterized LOC108350077 Neighboring gene DNA cross-link repair 1B

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
olfactomedin-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107708.1NP_001101178.1  olfactomedin-like protein 3 precursor

    See identical proteins and their annotated locations for NP_001101178.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474015
    UniProtKB/Swiss-Prot
    B0BNI5
    UniProtKB/TrEMBL
    A6K3M1, G3V8H7
    Related
    ENSRNOP00000026075.3, ENSRNOT00000026075.5
    Conserved Domains (1) summary
    pfam02191
    Location:151407
    OLF; Olfactomedin-like domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    193932665..193935494 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)