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Mttp microsomal triglyceride transfer protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 310900, updated on 5-Mar-2024

Summary

Official Symbol
Mttpprovided by RGD
Official Full Name
microsomal triglyceride transfer proteinprovided by RGD
Primary source
RGD:1308388
See related
Ensembl:ENSRNOG00000010655 AllianceGenome:RGD:1308388
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
MTP
Summary
Enables apolipoprotein binding activity and lipid transfer activity. Involved in several processes, including cholesterol homeostasis; lipoprotein metabolic process; and response to calcium ion. Located in several cellular components, including basolateral plasma membrane; cell projection membrane; and rough endoplasmic reticulum. Biomarker of familial hyperlipidemia. Human ortholog(s) of this gene implicated in several diseases, including abdominal obesity-metabolic syndrome 1; abetalipoproteinemia; familial hypercholesterolemia; hyperinsulinism; and obesity. Orthologous to human MTTP (microsomal triglyceride transfer protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 934.2) See more
Orthologs
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Genomic context

Location:
2q43
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (229286501..229327650, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (226613090..226654239, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (243366181..243407608, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102555623 Neighboring gene similar to human chromosome 4 open reading frame 54 Neighboring gene uncharacterized LOC134485978 Neighboring gene tRNA methyltransferase 10A Neighboring gene uncharacterized LOC134485979 Neighboring gene similar to human chromosome 4 open reading frame 17

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables apolipoprotein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables ceramide 1-phosphate transfer activity ISO
Inferred from Sequence Orthology
more info
 
enables cholesterol transfer activity IDA
Inferred from Direct Assay
more info
PubMed 
enables cholesterol transfer activity ISO
Inferred from Sequence Orthology
more info
 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 
enables lipid transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
enables lipid transporter activity ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylcholine transfer activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables phosphatidylcholine transfer activity ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylethanolamine transfer activity IDA
Inferred from Direct Assay
more info
PubMed 
enables phosphatidylethanolamine transfer activity ISO
Inferred from Sequence Orthology
more info
 
enables phospholipid transfer activity ISO
Inferred from Sequence Orthology
more info
 
enables phospholipid transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein heterodimerization activity ISO
Inferred from Sequence Orthology
more info
 
enables protein-containing complex binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables triglyceride transfer activity IDA
Inferred from Direct Assay
more info
PubMed 
enables triglyceride transfer activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in ceramide 1-phosphate transport IEA
Inferred from Electronic Annotation
more info
 
involved_in cholesterol homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cholesterol homeostasis IEP
Inferred from Expression Pattern
more info
PubMed 
acts_upstream_of_or_within cholesterol homeostasis ISO
Inferred from Sequence Orthology
more info
 
involved_in circadian rhythm ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within establishment of localization in cell ISO
Inferred from Sequence Orthology
more info
 
involved_in intermembrane lipid transfer IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within lipid metabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in lipid transport IDA
Inferred from Direct Assay
more info
PubMed 
involved_in lipoprotein metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in lipoprotein metabolic process IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within lipoprotein metabolic process ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within lipoprotein transport ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within low-density lipoprotein particle remodeling ISO
Inferred from Sequence Orthology
more info
 
involved_in phospholipid transport ISO
Inferred from Sequence Orthology
more info
 
involved_in plasma lipoprotein particle assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in plasma lipoprotein particle assembly ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in protein secretion ISO
Inferred from Sequence Orthology
more info
 
involved_in protein secretion ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in response to calcium ion IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in sterol transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within triglyceride metabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in triglyceride transport ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
is_active_in basolateral plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in basolateral plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in brush border membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in microvillus membrane IDA
Inferred from Direct Assay
more info
PubMed 
part_of receptor complex ISO
Inferred from Sequence Orthology
more info
 
located_in vesicle IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
microsomal triglyceride transfer protein large subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107727.1NP_001101197.1  microsomal triglyceride transfer protein large subunit precursor

    See identical proteins and their annotated locations for NP_001101197.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473952
    UniProtKB/Swiss-Prot
    D4A1W8
    Related
    ENSRNOP00000014630.4, ENSRNOT00000014631.7
    Conserved Domains (1) summary
    cl26969
    Location:28580
    Vitellogenin_N; Lipoprotein amino terminal region

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    229286501..229327650 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)