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Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit [ Rattus norvegicus (Norway rat) ]

Gene ID: 312299, updated on 2-May-2024

Summary

Official Symbol
Ezh2provided by RGD
Official Full Name
enhancer of zeste 2 polycomb repressive complex 2 subunitprovided by RGD
Primary source
RGD:1595860
See related
Ensembl:ENSRNOG00000006048 AllianceGenome:RGD:1595860
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Enables chromatin binding activity and transcription cis-regulatory region binding activity. Involved in several processes, including histone H3-K27 methylation; negative regulation of macromolecule metabolic process; and positive regulation of dendrite development. Located in cytoplasm and nucleus. Used to study endometriosis. Biomarker of leiomyoma; non-alcoholic fatty liver disease; and pancreatic cancer. Human ortholog(s) of this gene implicated in Weaver syndrome; bone cancer (multiple); gastrointestinal system cancer (multiple); hematologic cancer (multiple); and lung cancer. Orthologous to human EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 228.6), Spleen (RPKM 107.5) and 9 other tissues See more
Orthologs
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Genomic context

See Ezh2 in Genome Data Viewer
Location:
4q24
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (77624223..77698598, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (76624399..76687362, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (77284404..77347011, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene contactin associated protein 2 Neighboring gene uncharacterized LOC134486576 Neighboring gene small nuclear ribonucleoprotein polypeptides B and B1, pseudogene 2 Neighboring gene cullin 1 Neighboring gene uncharacterized LOC134486577 Neighboring gene zinc finger protein 786 Neighboring gene protein disulfide isomerase family A, member 4

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Clone Names

  • MGC189404

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables RNA binding ISO
Inferred from Sequence Orthology
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables RNA polymerase II core promoter sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables chromatin DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables chromatin binding ISO
Inferred from Sequence Orthology
more info
 
enables histone H3K27 methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables histone H3K27 methyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
enables histone H3K27 trimethyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables histone methyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
enables lncRNA binding ISO
Inferred from Sequence Orthology
more info
 
enables primary miRNA binding ISO
Inferred from Sequence Orthology
more info
 
enables promoter-specific chromatin binding ISO
Inferred from Sequence Orthology
more info
 
enables protein-lysine N-methyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
enables ribonucleoprotein complex binding ISO
Inferred from Sequence Orthology
more info
 
enables sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables transcription cis-regulatory region binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables transcription corepressor activity ISO
Inferred from Sequence Orthology
more info
 
enables transcription corepressor binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in B cell differentiation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within DNA methylation-dependent heterochromatin formation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within G1 to G0 transition ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of G1/S transition of mitotic cell cycle ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within cardiac muscle hypertrophy in response to stress ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within cellular response to hydrogen peroxide ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within cellular response to trichostatin A ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within cerebellar cortex development ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of epidermal cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in facultative heterochromatin formation ISO
Inferred from Sequence Orthology
more info
 
involved_in hemopoiesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within hepatocyte homeostasis ISO
Inferred from Sequence Orthology
more info
 
involved_in heterochromatin formation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in hippocampus development IEP
Inferred from Expression Pattern
more info
PubMed 
acts_upstream_of keratinocyte differentiation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within liver regeneration ISO
Inferred from Sequence Orthology
more info
 
involved_in methylation IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of G1/S transition of mitotic cell cycle ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of cytokine production involved in inflammatory response IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of epidermal cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of gene expression, epigenetic ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of keratinocyte differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of retinoic acid receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of stem cell differentiation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of striated muscle cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of transcription elongation by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell cycle G1/S phase transition ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of dendrite development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of epithelial to mesenchymal transition ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within protein localization to chromatin ISO
Inferred from Sequence Orthology
more info
 
involved_in protein modification process IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of circadian rhythm ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within regulation of gliogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of kidney development IEP
Inferred from Expression Pattern
more info
PubMed 
acts_upstream_of_or_within regulation of neurogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within regulation of protein phosphorylation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in regulatory ncRNA-mediated heterochromatin formation ISO
Inferred from Sequence Orthology
more info
 
involved_in response to estradiol IEP
Inferred from Expression Pattern
more info
PubMed 
acts_upstream_of_or_within response to tetrachloromethane ISO
Inferred from Sequence Orthology
more info
 
involved_in rhythmic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of stem cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in subtelomeric heterochromatin formation ISO
Inferred from Sequence Orthology
more info
 
involved_in synaptic transmission, GABAergic IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
part_of ESC/E(Z) complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of ESC/E(Z) complex ISO
Inferred from Sequence Orthology
more info
 
part_of chromatin ISO
Inferred from Sequence Orthology
more info
 
part_of chromatin silencing complex ISO
Inferred from Sequence Orthology
more info
 
is_active_in chromosome ISO
Inferred from Sequence Orthology
more info
 
located_in chromosome, telomeric region ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
part_of pericentric heterochromatin ISO
Inferred from Sequence Orthology
more info
 
located_in pronucleus ISO
Inferred from Sequence Orthology
more info
 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
histone-lysine N-methyltransferase EZH2
Names
enhancer of zeste homolog 2
NP_001128451.1
XP_006236463.1
XP_006236464.1
XP_006236465.1
XP_006236466.1
XP_006236467.1
XP_006236468.1
XP_006236470.1
XP_038963458.1
XP_038963460.1
XP_038963461.1
XP_038963462.1
XP_038963463.1
XP_063142080.1
XP_063142081.1
XP_063142082.1
XP_063142083.1
XP_063142084.1
XP_063142085.1
XP_063142086.1
XP_063142087.1
XP_063142088.1
XP_063142089.1
XP_063142090.1
XP_063142091.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134979.1NP_001128451.1  histone-lysine N-methyltransferase EZH2

    See identical proteins and their annotated locations for NP_001128451.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473959
    UniProtKB/TrEMBL
    A0A8I5ZPT6, B5DFE2, F7F5Z0
    Related
    ENSRNOP00000008149.4, ENSRNOT00000008149.6
    Conserved Domains (4) summary
    cd19218
    Location:609728
    SET_EZH2; SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins
    pfam11616
    Location:3968
    EZH2_WD-Binding; WD repeat binding protein EZH2
    pfam18118
    Location:158249
    PRC2_HTH_1; Polycomb repressive complex 2 tri-helical domain
    pfam18264
    Location:559590
    preSET_CXC; CXC domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    77624223..77698598 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063286021.1XP_063142091.1  histone-lysine N-methyltransferase EZH2 isoform X8

  2. XM_063286013.1XP_063142083.1  histone-lysine N-methyltransferase EZH2 isoform X4

  3. XM_063286019.1XP_063142089.1  histone-lysine N-methyltransferase EZH2 isoform X7

  4. XM_006236405.5XP_006236467.1  histone-lysine N-methyltransferase EZH2 isoform X3

    See identical proteins and their annotated locations for XP_006236467.1

    UniProtKB/TrEMBL
    A0A8I6GAA5
    Conserved Domains (4) summary
    cd19218
    Location:605724
    SET_EZH2; SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins
    pfam11616
    Location:3968
    EZH2_WD-Binding; WD repeat binding protein EZH2
    pfam18118
    Location:149240
    PRC2_HTH_1; Polycomb repressive complex 2 tri-helical domain
    pfam18264
    Location:555586
    preSET_CXC; CXC domain
  5. XM_063286018.1XP_063142088.1  histone-lysine N-methyltransferase EZH2 isoform X6

    UniProtKB/TrEMBL
    A0A8I6GJI6
  6. XM_063286015.1XP_063142085.1  histone-lysine N-methyltransferase EZH2 isoform X5

  7. XM_006236402.5XP_006236464.1  histone-lysine N-methyltransferase EZH2 isoform X1

    See identical proteins and their annotated locations for XP_006236464.1

    UniProtKB/TrEMBL
    A0A8I5ZPT6
    Conserved Domains (4) summary
    cd19218
    Location:614733
    SET_EZH2; SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins
    pfam11616
    Location:3968
    EZH2_WD-Binding; WD repeat binding protein EZH2
    pfam18118
    Location:158249
    PRC2_HTH_1; Polycomb repressive complex 2 tri-helical domain
    pfam18264
    Location:564595
    preSET_CXC; CXC domain
  8. XM_006236408.5XP_006236470.1  histone-lysine N-methyltransferase EZH2 isoform X8

    UniProtKB/TrEMBL
    A0A8I6GAA5
    Conserved Domains (4) summary
    cd19218
    Location:558677
    SET_EZH2; SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins
    pfam11616
    Location:3968
    EZH2_WD-Binding; WD repeat binding protein EZH2
    pfam18118
    Location:149240
    PRC2_HTH_1; Polycomb repressive complex 2 tri-helical domain
    pfam18264
    Location:508539
    preSET_CXC; CXC domain
  9. XM_006236406.5XP_006236468.1  histone-lysine N-methyltransferase EZH2 isoform X4

    UniProtKB/TrEMBL
    A0A8I6GAA5
    Conserved Domains (4) summary
    cd19218
    Location:600719
    SET_EZH2; SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins
    pfam11616
    Location:3968
    EZH2_WD-Binding; WD repeat binding protein EZH2
    pfam18118
    Location:149240
    PRC2_HTH_1; Polycomb repressive complex 2 tri-helical domain
    pfam18264
    Location:550581
    preSET_CXC; CXC domain
  10. XM_006236404.5XP_006236466.1  histone-lysine N-methyltransferase EZH2 isoform X3

    See identical proteins and their annotated locations for XP_006236466.1

    UniProtKB/TrEMBL
    A0A8I6GAA5
    Conserved Domains (4) summary
    cd19218
    Location:605724
    SET_EZH2; SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins
    pfam11616
    Location:3968
    EZH2_WD-Binding; WD repeat binding protein EZH2
    pfam18118
    Location:149240
    PRC2_HTH_1; Polycomb repressive complex 2 tri-helical domain
    pfam18264
    Location:555586
    preSET_CXC; CXC domain
  11. XM_063286016.1XP_063142086.1  histone-lysine N-methyltransferase EZH2 isoform X6

    UniProtKB/TrEMBL
    A0A8I6GJI6
  12. XM_006236403.5XP_006236465.1  histone-lysine N-methyltransferase EZH2 isoform X2

    See identical proteins and their annotated locations for XP_006236465.1

    UniProtKB/TrEMBL
    A0A8I5ZPT6, B5DFE2, F7F5Z0
    Related
    ENSRNOP00000092431.1
    Conserved Domains (4) summary
    cd19218
    Location:609728
    SET_EZH2; SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins
    pfam11616
    Location:3968
    EZH2_WD-Binding; WD repeat binding protein EZH2
    pfam18118
    Location:158249
    PRC2_HTH_1; Polycomb repressive complex 2 tri-helical domain
    pfam18264
    Location:559590
    preSET_CXC; CXC domain
  13. XM_006236401.5XP_006236463.1  histone-lysine N-methyltransferase EZH2 isoform X1

    See identical proteins and their annotated locations for XP_006236463.1

    UniProtKB/TrEMBL
    A0A8I5ZPT6
    Conserved Domains (4) summary
    cd19218
    Location:614733
    SET_EZH2; SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins
    pfam11616
    Location:3968
    EZH2_WD-Binding; WD repeat binding protein EZH2
    pfam18118
    Location:158249
    PRC2_HTH_1; Polycomb repressive complex 2 tri-helical domain
    pfam18264
    Location:564595
    preSET_CXC; CXC domain
  14. XM_063286017.1XP_063142087.1  histone-lysine N-methyltransferase EZH2 isoform X6

    UniProtKB/TrEMBL
    A0A8I6GJI6
  15. XM_063286020.1XP_063142090.1  histone-lysine N-methyltransferase EZH2 isoform X8

  16. XM_063286010.1XP_063142080.1  histone-lysine N-methyltransferase EZH2 isoform X1

  17. XM_063286014.1XP_063142084.1  histone-lysine N-methyltransferase EZH2 isoform X4

  18. XM_063286011.1XP_063142081.1  histone-lysine N-methyltransferase EZH2 isoform X2

    UniProtKB/TrEMBL
    B5DFE2, F7F5Z0
  19. XM_063286012.1XP_063142082.1  histone-lysine N-methyltransferase EZH2 isoform X3

  20. XM_039107530.2XP_038963458.1  histone-lysine N-methyltransferase EZH2 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZPT6
    Conserved Domains (4) summary
    cd19218
    Location:614733
    SET_EZH2; SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins
    pfam11616
    Location:3968
    EZH2_WD-Binding; WD repeat binding protein EZH2
    pfam18118
    Location:158249
    PRC2_HTH_1; Polycomb repressive complex 2 tri-helical domain
    pfam18264
    Location:564595
    preSET_CXC; CXC domain
  21. XM_039107532.1XP_038963460.1  histone-lysine N-methyltransferase EZH2 isoform X9

    UniProtKB/TrEMBL
    A0A8I6AHI4
    Conserved Domains (3) summary
    cd19218
    Location:505624
    SET_EZH2; SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins
    pfam18118
    Location:49140
    PRC2_HTH_1; Polycomb repressive complex 2 tri-helical domain
    pfam18264
    Location:455486
    preSET_CXC; CXC domain
  22. XM_039107533.2XP_038963461.1  histone-lysine N-methyltransferase EZH2 isoform X9

    UniProtKB/TrEMBL
    A0A8I6AHI4
    Conserved Domains (3) summary
    cd19218
    Location:505624
    SET_EZH2; SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins
    pfam18118
    Location:49140
    PRC2_HTH_1; Polycomb repressive complex 2 tri-helical domain
    pfam18264
    Location:455486
    preSET_CXC; CXC domain
  23. XM_039107535.2XP_038963463.1  histone-lysine N-methyltransferase EZH2 isoform X11

    Conserved Domains (2) summary
    cd19218
    Location:372491
    SET_EZH2; SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins
    pfam18264
    Location:322353
    preSET_CXC; CXC domain
  24. XM_039107534.2XP_038963462.1  histone-lysine N-methyltransferase EZH2 isoform X10

    Conserved Domains (2) summary
    cd19218
    Location:377496
    SET_EZH2; SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins
    pfam18264
    Location:327358
    preSET_CXC; CXC domain