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C4h2orf42 similar to human chromosome 2 open reading frame 42 [ Rattus norvegicus (Norway rat) ]

Gene ID: 312511, updated on 13-Apr-2024

Summary

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Official Symbol
C4h2orf42provided by RGD
Official Full Name
similar to human chromosome 2 open reading frame 42provided by RGD
Primary source
RGD:1306746
See related
Ensembl:ENSRNOG00000017380 AllianceGenome:RGD:1306746
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306746
Summary
Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human C2orf42 (chromosome 2 open reading frame 42). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 74.8), Thymus (RPKM 43.4) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
4q34
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (120445032..120474227)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (118887688..118916808)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (118240681..118271771)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon CCC) 4 Neighboring gene TIA1 cytotoxic granule-associated RNA binding protein Neighboring gene uncharacterized LOC134486603 Neighboring gene uncharacterized LOC134486604 Neighboring gene poly(rC) binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein C2orf42 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107872.3 → NP_001101342.2  uncharacterized protein C2orf42 homolog

    See identical proteins and their annotated locations for NP_001101342.2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A6IAX1, A6IAX2, B2RYC3, F7FFR6
    Related
    ENSRNOP00000023654.4, ENSRNOT00000023654.6
    Conserved Domains (1) summary
    pfam14952
    Location:16 → 57
    zf-tcix; Putative treble-clef, zinc-finger, Zn-binding

  2. NM_001419487.1 → NP_001406416.1  uncharacterized protein C2orf42 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A6IAX1, B2RYC3, F7FFR6

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    120445032..120474227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008763074.4 → XP_008761296.1  uncharacterized protein C2orf42 homolog isoform X1

    See identical proteins and their annotated locations for XP_008761296.1

    UniProtKB/TrEMBL
    A6IAX1, A6IAX2, B2RYC3, F7FFR6
    Conserved Domains (1) summary
    pfam14952
    Location:16 → 57
    zf-tcix; Putative treble-clef, zinc-finger, Zn-binding

  2. XM_063286073.1 → XP_063142143.1  uncharacterized protein C2orf42 homolog isoform X1

    UniProtKB/TrEMBL
    A6IAX1, B2RYC3, F7FFR6

  3. XM_039107616.2 → XP_038963544.1  uncharacterized protein C2orf42 homolog isoform X2

    Conserved Domains (1) summary
    pfam14952
    Location:16 → 32
    zf-tcix; Putative treble-clef, zinc-finger, Zn-binding

  4. XM_008763071.4 → XP_008761293.1  uncharacterized protein C2orf42 homolog isoform X1

    See identical proteins and their annotated locations for XP_008761293.1

    UniProtKB/TrEMBL
    A6IAX1, A6IAX2, B2RYC3, F7FFR6
    Conserved Domains (1) summary
    pfam14952
    Location:16 → 57
    zf-tcix; Putative treble-clef, zinc-finger, Zn-binding

  5. XM_008763073.4 → XP_008761295.1  uncharacterized protein C2orf42 homolog isoform X1

    See identical proteins and their annotated locations for XP_008761295.1

    UniProtKB/TrEMBL
    A6IAX1, A6IAX2, B2RYC3, F7FFR6
    Conserved Domains (1) summary
    pfam14952
    Location:16 → 57
    zf-tcix; Putative treble-clef, zinc-finger, Zn-binding

  6. XM_063286075.1 → XP_063142145.1  uncharacterized protein C2orf42 homolog isoform X2

  7. XM_063286074.1 → XP_063142144.1  uncharacterized protein C2orf42 homolog isoform X2

RNA

  1. XR_005503222.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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