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Cpr5C Cuticular protein 5C [ Drosophila melanogaster (fruit fly) ]

Gene ID: 31510, updated on 10-May-2024

Summary

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Official Symbol
Cpr5Cprovided by FlyBase
Official Full Name
Cuticular protein 5Cprovided by FlyBase
Primary source
FLYBASE:FBgn0029811
Locus tag
Dmel_CG4052
See related
AllianceGenome:FB:FBgn0029811
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG4052; Dmel\CG4052
Summary
Predicted to be a structural constituent of chitin-based larval cuticle. Predicted to be involved in chitin-based cuticle development. Predicted to be located in chitin-based extracellular matrix. Predicted to be active in extracellular matrix. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See Cpr5C in Genome Data Viewer
Location:
5C2-5C2; 1-14 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (5804677..5805344)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (5698710..5699377)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44832 Neighboring gene uncharacterized protein Neighboring gene Proteasome beta2 subunit-related 1 Neighboring gene long non-coding RNA:CR45529

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables structural constituent of chitin-based larval cuticle ISM
Inferred from Sequence Model
more info
 PubMed 
Process Evidence Code Pubs
involved_in chitin-based cuticle development ISM
Inferred from Sequence Model
more info
 PubMed 
Component Evidence Code Pubs
located_in chitin-based extracellular matrix ISM
Inferred from Sequence Model
more info
 PubMed 
is_active_in extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
cuticular protein 5C
Names
CG4052-PA
Cpr5C-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    5804677..5805344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_132038.2 → NP_572266.1  cuticular protein 5C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572266.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W471
    Related
    FBpp0070781
    Conserved Domains (1) summary
    pfam00379
    Location:64 → 116
    Chitin_bind_4; Insect cuticle protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9W471 Q9W471

Gene LinkOut

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