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Csprs component of Sp100-rs [ Rattus norvegicus (Norway rat) ]

Gene ID: 316579, updated on 11-Apr-2024

Summary

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Official Symbol
Csprsprovided by RGD
Official Full Name
component of Sp100-rsprovided by RGD
Primary source
RGD:1310830
See related
Ensembl:ENSRNOG00000017256 AllianceGenome:RGD:1310830
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 9.6), Testes (RPKM 6.6) and 4 other tissues See more
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Genomic context

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Location:
9q35
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (93613834..93620964)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (86165783..86174596)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (92559533..92566923)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102550706 Neighboring gene solute carrier family 16, member 14 Neighboring gene uncharacterized LOC120094727 Neighboring gene uncharacterized LOC134480599 Neighboring gene SP110 nuclear body protein Neighboring gene SP140 nuclear body protein Neighboring gene SP100 nuclear antigen

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables odorant binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables olfactory receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in detection of chemical stimulus involved in sensory perception of smell IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
olfactory receptor 11G2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    93613834..93620964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006245490.4 → XP_006245552.1  olfactory receptor 11G2

    See identical proteins and their annotated locations for XP_006245552.1

    UniProtKB/TrEMBL
    F1M529
    Conserved Domains (1) summary
    pfam00001
    Location:106 → 273
    7tm_1; 7 transmembrane receptor (rhodopsin family)

  2. XM_006245489.4 → XP_006245551.1  olfactory receptor 11G2

    See identical proteins and their annotated locations for XP_006245551.1

    UniProtKB/TrEMBL
    F1M529
    Related
    ENSRNOP00000023184.7
    Conserved Domains (1) summary
    pfam00001
    Location:106 → 273
    7tm_1; 7 transmembrane receptor (rhodopsin family)
Nucleotide Protein Strain
Heading Accession and Version

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