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Ribc1 RIB43A domain with coiled-coils 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 317431, updated on 11-Apr-2024

Summary

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Official Symbol
Ribc1provided by RGD
Official Full Name
RIB43A domain with coiled-coils 1provided by RGD
Primary source
RGD:1359621
See related
Ensembl:ENSRNOG00000003081 AllianceGenome:RGD:1359621
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human RIBC1 (RIB43A domain with coiled-coils 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 77.2), Kidney (RPKM 41.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ribc1 in Genome Data Viewer
Location:
Xq13
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (24571126..24583170, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (21091717..21103688, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (21699361..21711335, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 Neighboring gene microRNA 98 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 10 Neighboring gene structural maintenance of chromosomes 1A Neighboring gene large ribosomal subunit protein eL31-like Neighboring gene IQ motif and Sec7 domain ArfGEF 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC93902

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in axonemal A tubule inner sheath IEA
Inferred from Electronic Annotation
more info
  
is_active_in axonemal A tubule inner sheath ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
RIB43A-like with coiled-coils protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007715.1 → NP_001007716.1  RIB43A-like with coiled-coils protein 1

    See identical proteins and their annotated locations for NP_001007716.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078998
    UniProtKB/Swiss-Prot
    Q6AYL4
    UniProtKB/TrEMBL
    A6KLB1
    Conserved Domains (1) summary
    pfam05914
    Location:4 → 378
    RIB43A; RIB43A

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    24571126..24583170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006256803.5 → XP_006256865.1  RIB43A-like with coiled-coils protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006256865.1

    UniProtKB/Swiss-Prot
    Q6AYL4
    UniProtKB/TrEMBL
    A6KLB1
    Conserved Domains (1) summary
    pfam05914
    Location:4 → 378
    RIB43A; RIB43A

  2. XM_039099821.2 → XP_038955749.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q0T1
    Conserved Domains (1) summary
    pfam05914
    Location:12 → 386
    RIB43A

  3. XM_006256802.5 → XP_006256864.1  RIB43A-like with coiled-coils protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006256864.1

    UniProtKB/Swiss-Prot
    Q6AYL4
    UniProtKB/TrEMBL
    A6KLB1
    Conserved Domains (1) summary
    pfam05914
    Location:4 → 378
    RIB43A; RIB43A

  4. XM_006256805.5 → XP_006256867.1  RIB43A-like with coiled-coils protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006256867.1

    UniProtKB/Swiss-Prot
    Q6AYL4
    UniProtKB/TrEMBL
    A6KLB1
    Conserved Domains (1) summary
    pfam05914
    Location:4 → 378
    RIB43A; RIB43A

  5. XM_006256800.4 → XP_006256862.1  RIB43A-like with coiled-coils protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006256862.1

    UniProtKB/Swiss-Prot
    Q6AYL4
    UniProtKB/TrEMBL
    A6KLB1
    Conserved Domains (1) summary
    pfam05914
    Location:4 → 378
    RIB43A; RIB43A

  6. XM_063280069.1 → XP_063136139.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q0T1

  7. XM_039099816.2 → XP_038955744.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q0T1
    Conserved Domains (1) summary
    pfam05914
    Location:12 → 386
    RIB43A

  8. XM_039099815.2 → XP_038955743.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q0T1
    Conserved Domains (1) summary
    pfam05914
    Location:12 → 386
    RIB43A

  9. XM_063280071.1 → XP_063136141.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q0T1

  10. XM_063280068.1 → XP_063136138.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q0T1

  11. XM_006256801.4 → XP_006256863.1  RIB43A-like with coiled-coils protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006256863.1

    UniProtKB/Swiss-Prot
    Q6AYL4
    UniProtKB/TrEMBL
    A6KLB1
    Conserved Domains (1) summary
    pfam05914
    Location:4 → 378
    RIB43A; RIB43A

  12. XM_039099817.2 → XP_038955745.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q0T1
    Conserved Domains (1) summary
    pfam05914
    Location:12 → 386
    RIB43A

  13. XM_063280072.1 → XP_063136142.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q0T1

  14. XM_039099822.2 → XP_038955750.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q0T1
    Conserved Domains (1) summary
    pfam05914
    Location:12 → 386
    RIB43A

  15. XM_039099820.2 → XP_038955748.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q0T1
    Conserved Domains (1) summary
    pfam05914
    Location:12 → 386
    RIB43A

  16. XM_039099818.2 → XP_038955746.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q0T1
    Conserved Domains (1) summary
    pfam05914
    Location:12 → 386
    RIB43A

  17. XM_006256804.4 → XP_006256866.1  RIB43A-like with coiled-coils protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006256866.1

    UniProtKB/Swiss-Prot
    Q6AYL4
    UniProtKB/TrEMBL
    A6KLB1
    Conserved Domains (1) summary
    pfam05914
    Location:4 → 378
    RIB43A; RIB43A
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6AYL4.1 GenPept UniProtKB/Swiss-Prot:Q6AYL4

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