U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Utp14a UTP14A small subunit processome component [ Rattus norvegicus (Norway rat) ]

Gene ID: 317579, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Utp14aprovided by RGD
Official Full Name
UTP14A small subunit processome componentprovided by RGD
Primary source
RGD:1359313
See related
Ensembl:ENSRNOG00000005012 AllianceGenome:RGD:1359313
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in rRNA processing. Predicted to be located in cytosol. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human UTP14A (UTP14A small subunit processome component). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 58.6), Thymus (RPKM 57.2) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Utp14a in Genome Data Viewer
Location:
Xq36
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (132317163..132342524)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (127439282..127464634)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (135092123..135117409)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 9 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene BCL6 co-repressor-like 1 Neighboring gene NADH:ubiquinone oxidoreductase subunit B4, pseudogene 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
  
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
U3 small nucleolar RNA-associated protein 14 homolog A
Names
UTP14, U3 small nucleolar ribonucleoprotein, homolog A
UTP14A small subunit (SSU) processome component

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014113.2 → NP_001014135.2  U3 small nucleolar RNA-associated protein 14 homolog A

    See identical proteins and their annotated locations for NP_001014135.2

    Status: PROVISIONAL

    Source sequence(s)
    BC099799
    UniProtKB/TrEMBL
    A0A8I5ZJ69, Q499R2
    Related
    ENSRNOP00000051553.5, ENSRNOT00000048022.6
    Conserved Domains (1) summary
    pfam04615
    Location:29 → 728
    Utp14; Utp14 protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    132317163..132342524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039099850.2 → XP_038955778.2  U3 small nucleolar RNA-associated protein 14 homolog A isoform X1

  2. XM_039099849.2 → XP_038955777.1  U3 small nucleolar RNA-associated protein 14 homolog A isoform X2

    UniProtKB/TrEMBL
    A6JMP9
    Conserved Domains (1) summary
    pfam04615
    Location:96 → 573
    Utp14; Utp14 protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous