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A130010J15Rik RIKEN cDNA A130010J15 gene [ Mus musculus (house mouse) ]

Gene ID: 319266, updated on 23-Jun-2021

Summary

Official Symbol
A130010J15Rikprovided by MGI
Official Full Name
RIKEN cDNA A130010J15 geneprovided by MGI
Primary source
MGI:MGI:2441776
See related
Ensembl:ENSMUSG00000079144
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in bladder adult (RPKM 2.7), testis adult (RPKM 1.9) and 28 other tissues See more
Orthologs
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Genomic context

See A130010J15Rik in Genome Data Viewer
Location:
1; 1 H6
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (192855777..192860145)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (193173469..193177837)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (194999663..195004026)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene UTP25 small subunit processome component Neighboring gene interferon regulatory factor 6 Neighboring gene TRAF3 interacting protein 3 Neighboring gene hydroxysteroid 11-beta dehydrogenase 1 Neighboring gene G0/G1 switch gene 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Homology

Clone Names

  • AL365322.1

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
UPF0739 protein C1orf74 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001160359.1NP_001153831.1  UPF0739 protein C1orf74 homolog

    See identical proteins and their annotated locations for NP_001153831.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
    Source sequence(s)
    AL365322, BB858416, BY011244
    Consensus CDS
    CCDS15633.1
    UniProtKB/Swiss-Prot
    Q9DAE8
    Related
    ENSMUSP00000136653.2, ENSMUST00000178744.2
    Conserved Domains (1) summary
    pfam14953
    Location:15263
    DUF4504; Domain of unknown function (DUF4504)
  2. NM_001160360.1NP_001153832.1  UPF0739 protein C1orf74 homolog

    See identical proteins and their annotated locations for NP_001153832.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
    Source sequence(s)
    AK077339, AL365322
    Consensus CDS
    CCDS15633.1
    UniProtKB/Swiss-Prot
    Q9DAE8
    Related
    ENSMUSP00000124191.2, ENSMUST00000161235.3
    Conserved Domains (1) summary
    pfam14953
    Location:15263
    DUF4504; Domain of unknown function (DUF4504)
  3. NM_181048.3NP_851391.1  UPF0739 protein C1orf74 homolog

    See identical proteins and their annotated locations for NP_851391.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. All three variants encode the same protein.
    Source sequence(s)
    AK037364, AL365322, BY011244
    Consensus CDS
    CCDS15633.1
    UniProtKB/Swiss-Prot
    Q9DAE8
    Related
    ENSMUSP00000106455.3, ENSMUST00000110831.4
    Conserved Domains (1) summary
    pfam14953
    Location:15263
    DUF4504; Domain of unknown function (DUF4504)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    192855777..192860145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006497253.5XP_006497316.1  UPF0739 protein C1orf74 homolog isoform X1

    See identical proteins and their annotated locations for XP_006497316.1

    UniProtKB/Swiss-Prot
    Q9DAE8
    Conserved Domains (1) summary
    pfam14953
    Location:15263
    DUF4504; Domain of unknown function (DUF4504)
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