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Cobll1 Cobl-like 1 [ Mus musculus (house mouse) ]

Gene ID: 319876, updated on 23-Jun-2021

Summary

Official Symbol
Cobll1provided by MGI
Official Full Name
Cobl-like 1provided by MGI
Primary source
MGI:MGI:2442894
See related
Ensembl:ENSMUSG00000034903
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cob; Coblr1; 1810047P18Rik; D430044D16Rik
Expression
Broad expression in adrenal adult (RPKM 24.9), kidney adult (RPKM 14.3) and 20 other tissues See more
Orthologs
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Genomic context

See Cobll1 in Genome Data Viewer
Location:
2; 2 C1.3
Exon count:
21
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (64918683..65069742, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (65088339..65239398, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (64926396..65076683, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene 13578 Neighboring gene growth factor receptor bound protein 14 Neighboring gene U7 small nuclear RNA Neighboring gene predicted gene 13594 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene 13593

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables actin monomer binding IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cordon-bleu protein-like 1
Names
cobl-related 1
cobl-related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001363076.1NP_001350005.1  cordon-bleu protein-like 1 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (3).
    Source sequence(s)
    AL929129, AL929132, AL935171, BX321909
    Conserved Domains (2) summary
    pfam09469
    Location:188266
    Cobl; Cordon-bleu ubiquitin-like domain
    cl26464
    Location:9051176
    Atrophin-1; Atrophin-1 family
  2. NM_001363077.1NP_001350006.1  cordon-bleu protein-like 1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL929129, AL929132, AL935171
    Consensus CDS
    CCDS89492.1
    Related
    ENSMUSP00000108050.2, ENSMUST00000112431.8
    Conserved Domains (2) summary
    pfam09469
    Location:156234
    Cobl; Cordon-bleu ubiquitin-like domain
    cl26464
    Location:8731144
    Atrophin-1; Atrophin-1 family
  3. NM_027225.2NP_081501.1  cordon-bleu protein-like 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL929129, AL929132, AL935171
    Consensus CDS
    CCDS50595.1
    UniProtKB/Swiss-Prot
    Q3UMF0
    Related
    ENSMUSP00000088412.4, ENSMUST00000090896.10
    Conserved Domains (2) summary
    pfam09469
    Location:156234
    Cobl; Cordon-bleu ubiquitin-like domain
    cl00155
    Location:72141
    UBQ; Ubiquitin-like proteins
  4. NM_177025.6NP_795999.2  cordon-bleu protein-like 1 isoform 1

    See identical proteins and their annotated locations for NP_795999.2

    Status: VALIDATED

    Source sequence(s)
    AL929129, AL929132, AL935171
    Consensus CDS
    CCDS16072.1
    UniProtKB/Swiss-Prot
    Q3UMF0
    UniProtKB/TrEMBL
    B1AZ15
    Related
    ENSMUSP00000099787.2, ENSMUST00000102726.8
    Conserved Domains (3) summary
    pfam09528
    Location:286840
    Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
    pfam09469
    Location:156234
    Cobl; Cordon-bleu ubiquitin-like domain
    cl00155
    Location:72141
    UBQ; Ubiquitin-like proteins

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    64918683..65069742 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006499717.3XP_006499780.1  cordon-bleu protein-like 1 isoform X9

    Conserved Domains (2) summary
    PHA03247
    Location:8851156
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:155231
    Cobl; Cordon-bleu ubiquitin-like domain
  2. XM_006499716.5XP_006499779.1  cordon-bleu protein-like 1 isoform X8

    Conserved Domains (2) summary
    PHA03247
    Location:8861157
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:156232
    Cobl; Cordon-bleu ubiquitin-like domain
  3. XM_011239598.4XP_011237900.1  cordon-bleu protein-like 1 isoform X4

    Conserved Domains (2) summary
    PHA03247
    Location:9061177
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:176252
    Cobl; Cordon-bleu ubiquitin-like domain
  4. XM_006499711.5XP_006499774.1  cordon-bleu protein-like 1 isoform X2

    Conserved Domains (2) summary
    PHA03247
    Location:9051176
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:175251
    Cobl; Cordon-bleu ubiquitin-like domain
  5. XM_006499715.5XP_006499778.1  cordon-bleu protein-like 1 isoform X7

    Conserved Domains (2) summary
    PHA03247
    Location:8921163
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:176254
    Cobl; Cordon-bleu ubiquitin-like domain
  6. XM_006499712.5XP_006499775.1  cordon-bleu protein-like 1 isoform X3

    Conserved Domains (2) summary
    PHA03247
    Location:9051176
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:176252
    Cobl; Cordon-bleu ubiquitin-like domain
  7. XM_006499710.5XP_006499773.1  cordon-bleu protein-like 1 isoform X1

    Conserved Domains (2) summary
    PHA03247
    Location:9061177
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:176252
    Cobl; Cordon-bleu ubiquitin-like domain
  8. XM_030251742.2XP_030107602.1  cordon-bleu protein-like 1 isoform X17

    Conserved Domains (2) summary
    PHA03247
    Location:8531124
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:175253
    Cobl; Cordon-bleu ubiquitin-like domain
  9. XM_006499722.5XP_006499785.1  cordon-bleu protein-like 1 isoform X15

    Conserved Domains (2) summary
    PHA03247
    Location:8541125
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:175253
    Cobl; Cordon-bleu ubiquitin-like domain
  10. XM_006499714.5XP_006499777.1  cordon-bleu protein-like 1 isoform X6

    Conserved Domains (2) summary
    PHA03247
    Location:8921163
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:175253
    Cobl; Cordon-bleu ubiquitin-like domain
  11. XM_030251741.2XP_030107601.1  cordon-bleu protein-like 1 isoform X16

    Conserved Domains (2) summary
    PHA03247
    Location:8541125
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:176254
    Cobl; Cordon-bleu ubiquitin-like domain
  12. XM_006499721.5XP_006499784.1  cordon-bleu protein-like 1 isoform X14

    Conserved Domains (2) summary
    PHA03247
    Location:8551126
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:176254
    Cobl; Cordon-bleu ubiquitin-like domain
  13. XM_006499713.5XP_006499776.1  cordon-bleu protein-like 1 isoform X5

    Conserved Domains (2) summary
    PHA03247
    Location:8931164
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:176254
    Cobl; Cordon-bleu ubiquitin-like domain
  14. XM_006499718.5XP_006499781.1  cordon-bleu protein-like 1 isoform X11

    Conserved Domains (2) summary
    PHA03247
    Location:8681139
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:176252
    Cobl; Cordon-bleu ubiquitin-like domain
  15. XM_030251750.1XP_030107610.1  cordon-bleu protein-like 1 isoform X21

    Conserved Domains (1) summary
    PHA03247
    Location:646917
    PHA03247; large tegument protein UL36; Provisional
  16. XM_030251749.1XP_030107609.1  cordon-bleu protein-like 1 isoform X21

    Conserved Domains (1) summary
    PHA03247
    Location:646917
    PHA03247; large tegument protein UL36; Provisional
  17. XM_036162291.1XP_036018184.1  cordon-bleu protein-like 1 isoform X10

    Conserved Domains (5) summary
    PHA03247
    Location:8731144
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:156234
    Cobl; Cordon-bleu ubiquitin-like domain
    cd21762
    Location:12111214
    WH2; actin-binding sequence [structural motif]
    cl28922
    Location:72136
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    cl41728
    Location:11901214
    WH2; Wiskott-Aldrich Syndrome Homology (WASP) region 2 (WH2 motif), and similar proteins
  18. XM_006499723.4XP_006499786.1  cordon-bleu protein-like 1 isoform X20

    See identical proteins and their annotated locations for XP_006499786.1

    Conserved Domains (2) summary
    PHA03247
    Location:8221093
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:92168
    Cobl; Cordon-bleu ubiquitin-like domain
  19. XM_030251745.1XP_030107605.1  cordon-bleu protein-like 1 isoform X19

    Conserved Domains (2) summary
    PHA03247
    Location:8491120
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:132210
    Cobl; Cordon-bleu ubiquitin-like domain
  20. XM_030251744.1XP_030107604.1  cordon-bleu protein-like 1 isoform X18

    Conserved Domains (2) summary
    PHA03247
    Location:8501121
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:133211
    Cobl; Cordon-bleu ubiquitin-like domain
  21. XM_006499720.2XP_006499783.1  cordon-bleu protein-like 1 isoform X13

    Conserved Domains (2) summary
    PHA03247
    Location:8621133
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:132208
    Cobl; Cordon-bleu ubiquitin-like domain
  22. XM_006499719.2XP_006499782.1  cordon-bleu protein-like 1 isoform X12

    Conserved Domains (2) summary
    PHA03247
    Location:8631134
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:133209
    Cobl; Cordon-bleu ubiquitin-like domain
  23. XM_006499724.3XP_006499787.1  cordon-bleu protein-like 1 isoform X20

    See identical proteins and their annotated locations for XP_006499787.1

    Conserved Domains (2) summary
    PHA03247
    Location:8221093
    PHA03247; large tegument protein UL36; Provisional
    pfam09469
    Location:92168
    Cobl; Cordon-bleu ubiquitin-like domain
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