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Iqcb1 IQ calmodulin-binding motif containing 1 [ Mus musculus (house mouse) ]

Gene ID: 320299, updated on 16-Oct-2021

Summary

Official Symbol
Iqcb1provided by MGI
Official Full Name
IQ calmodulin-binding motif containing 1provided by MGI
Primary source
MGI:MGI:2443764
See related
Ensembl:ENSMUSG00000022837
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
NPHP5; AV128382; 6820449I09Rik
Expression
Broad expression in CNS E11.5 (RPKM 2.8), CNS E14 (RPKM 2.2) and 17 other tissues See more
Orthologs
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Genomic context

See Iqcb1 in Genome Data Viewer
Location:
16; 16 B3
Exon count:
15
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (36648722..36694044)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (36828360..36872719)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (36828486..36872805)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene RNA guanylyltransferase and 5'-phosphatase pseudogene Neighboring gene solute carrier family 15 (H+/peptide transporter), member 2 Neighboring gene 60S ribosomal protein L7a pseudogene Neighboring gene ELL associated factor 2 Neighboring gene RIKEN cDNA 4930565N06 gene Neighboring gene golgi autoantigen, golgin subfamily b, macrogolgin 1 Neighboring gene hematopoietic cell specific Lyn substrate 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables calmodulin binding ISO
Inferred from Sequence Orthology
more info
 
enables calmodulin binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables enzyme binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell projection organization IEA
Inferred from Electronic Annotation
more info
 
involved_in cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in maintenance of animal organ identity ISO
Inferred from Sequence Orthology
more info
 
involved_in maintenance of animal organ identity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
involved_in photoreceptor cell maintenance ISO
Inferred from Sequence Orthology
more info
 
involved_in photoreceptor cell maintenance ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
located_in centrosome ISO
Inferred from Sequence Orthology
more info
 
is_active_in cilium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in intercellular bridge ISO
Inferred from Sequence Orthology
more info
 
located_in microtubule cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
located_in mitotic spindle ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in photoreceptor connecting cilium IDA
Inferred from Direct Assay
more info
PubMed 
located_in photoreceptor connecting cilium ISO
Inferred from Sequence Orthology
more info
 
located_in photoreceptor outer segment IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
IQ calmodulin-binding motif-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177128.4NP_796102.2  IQ calmodulin-binding motif-containing protein 1

    See identical proteins and their annotated locations for NP_796102.2

    Status: VALIDATED

    Source sequence(s)
    AK165220, BE652573, BY127963
    Consensus CDS
    CCDS28157.1
    UniProtKB/Swiss-Prot
    Q8BP00
    Related
    ENSMUSP00000023535.4, ENSMUST00000023535.4
    Conserved Domains (2) summary
    COG5022
    Location:293408
    COG5022; Myosin heavy chain [General function prediction only]
    cd22307
    Location:385430
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    36648722..36694044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036159985.1XP_036015878.1  IQ calmodulin-binding motif-containing protein 1 isoform X1

    Conserved Domains (2) summary
    COG5022
    Location:293408
    COG5022; Myosin heavy chain [General function prediction only]
    cd22307
    Location:385430
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif
  2. XM_006522249.4XP_006522312.1  IQ calmodulin-binding motif-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006522312.1

    UniProtKB/Swiss-Prot
    Q8BP00
    Conserved Domains (2) summary
    COG5022
    Location:293408
    COG5022; Myosin heavy chain [General function prediction only]
    cd22307
    Location:385430
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif
  3. XM_006522247.4XP_006522310.1  IQ calmodulin-binding motif-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006522310.1

    UniProtKB/Swiss-Prot
    Q8BP00
    Conserved Domains (2) summary
    COG5022
    Location:293408
    COG5022; Myosin heavy chain [General function prediction only]
    cd22307
    Location:385430
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif
  4. XM_036159986.1XP_036015879.1  IQ calmodulin-binding motif-containing protein 1 isoform X3

    Conserved Domains (2) summary
    COG5022
    Location:293437
    COG5022; Myosin heavy chain [General function prediction only]
    cd22307
    Location:385425
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif
  5. XM_030249154.1XP_030105014.1  IQ calmodulin-binding motif-containing protein 1 isoform X3

    Conserved Domains (2) summary
    COG5022
    Location:293437
    COG5022; Myosin heavy chain [General function prediction only]
    cd22307
    Location:385425
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif
  6. XM_036159987.1XP_036015880.1  IQ calmodulin-binding motif-containing protein 1 isoform X4

    Conserved Domains (1) summary
    cd22307
    Location:252292
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif
  7. XM_030249153.2XP_030105013.1  IQ calmodulin-binding motif-containing protein 1 isoform X1

    Conserved Domains (2) summary
    COG5022
    Location:293408
    COG5022; Myosin heavy chain [General function prediction only]
    cd22307
    Location:385430
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif
  8. XM_006522248.3XP_006522311.1  IQ calmodulin-binding motif-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006522311.1

    UniProtKB/Swiss-Prot
    Q8BP00
    Conserved Domains (2) summary
    COG5022
    Location:293408
    COG5022; Myosin heavy chain [General function prediction only]
    cd22307
    Location:385430
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif
  9. XM_006522250.5XP_006522313.1  IQ calmodulin-binding motif-containing protein 1 isoform X3

    See identical proteins and their annotated locations for XP_006522313.1

    Conserved Domains (2) summary
    COG5022
    Location:293437
    COG5022; Myosin heavy chain [General function prediction only]
    cd22307
    Location:385425
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif
  10. XM_017317037.2XP_017172526.1  IQ calmodulin-binding motif-containing protein 1 isoform X2

    Conserved Domains (1) summary
    smart00015
    Location:254275
    IQ; Calmodulin-binding motif

RNA

  1. XR_004939196.1 RNA Sequence

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