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A130071D04Rik RIKEN cDNA A130071D04 gene [ Mus musculus (house mouse) ]

Gene ID: 320791, updated on 8-Feb-2024

Summary

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Official Symbol
A130071D04Rikprovided by MGI
Official Full Name
RIKEN cDNA A130071D04 geneprovided by MGI
Primary source
MGI:MGI:2444749
See related
AllianceGenome:MGI:2444749
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
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Genomic context

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See A130071D04Rik in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (138092759..138095809, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 41959 Neighboring gene microRNA 181b-1 Neighboring gene predicted gene, 34353 Neighboring gene STARR-positive B cell enhancer mm9_chr1:139941089-139941390 Neighboring gene STARR-seq mESC enhancer starr_02458 Neighboring gene STARR-seq mESC enhancer starr_02459 Neighboring gene protein tyrosine phosphatase receptor type C Neighboring gene STARR-positive B cell enhancer ABC_E7753 Neighboring gene STARR-positive B cell enhancer ABC_E11693 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:140033032-140033324 Neighboring gene STARR-positive B cell enhancer ABC_E3306 Neighboring gene STARR-positive B cell enhancer ABC_E5810 Neighboring gene STARR-positive B cell enhancer ABC_E11090 Neighboring gene STARR-seq mESC enhancer starr_02460 Neighboring gene STARR-seq mESC enhancer starr_02461 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:140088258-140088597 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:140088625-140088861 Neighboring gene terminal nucleotidyltransferase 2, pseudogene 2 Neighboring gene STARR-positive B cell enhancer ABC_E2563 Neighboring gene predicted gene, 53479

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000067.7 Chromosome 1 Reference GRCm39 C57BL/6J

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_190156.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC159278

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    138092759..138095809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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