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CG4404 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 32241, updated on 10-May-2024

Summary

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Official Symbol
CG4404provided by FlyBase
Primary source
FLYBASE:FBgn0030432
Locus tag
Dmel_CG4404
See related
AllianceGenome:FB:FBgn0030432
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG4404
Summary
Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in germarium; organism; and primordial germ cell. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

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See CG4404 in Genome Data Viewer
Location:
11D1-11D1; 1-41 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (12903745..12906018, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (12797778..12800051, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Coenzyme Q8 Neighboring gene Flavin adenine dinucleotide synthetase 1 Neighboring gene mitochondrial ribosomal protein L49 Neighboring gene BRMS1 transcriptional repressor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Fine scale analysis of gene expression in Drosophila melanogaster gonads reveals Programmed cell death 4 promotes the differentiation of female germline stem cells. Cash AC, et al. BMC Dev Biol, 2012 Jan 17. PMID 22252300, Free PMC Article
  2. The Drosophila radish gene encodes a protein required for anesthesia-resistant memory. Folkers E, et al. Proc Natl Acad Sci U S A, 2006 Nov 14. PMID 17088531, Free PMC Article
  3. Stonewall and Brickwall: Two Partially Redundant Determinants Required for the Maintenance of Female Germline in Drosophila. Shukla V, et al. G3 (Bethesda), 2018 May 31. PMID 29669801, Free PMC Article
  4. The MADF-BESS domain factor Dip3 potentiates synergistic activation by Dorsal and Twist. Bhaskar V, et al. Gene, 2002 Oct 16. PMID 12459265
  5. Gene duplication, lineage-specific expansion, and subfunctionalization in the MADF-BESS family patterns the Drosophila wing hinge. Shukla V, et al. Genetics, 2014 Feb. PMID 24336749, Free PMC Article

See all (37) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG4404-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    12903745..12906018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_132610.4 → NP_572838.2  uncharacterized protein Dmel_CG4404 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572838.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SXW4, Q9VYI4
    Related
    FBpp0073527
    Conserved Domains (2) summary
    smart00595
    Location:17 → 103
    MADF; subfamily of SANT domain
    pfam02944
    Location:267 → 301
    BESS; BESS motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8SXW4 Q8SXW4
Q9VYI4 Q9VYI4

Gene LinkOut

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