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ttpa tocopherol (alpha) transfer protein [ Danio rerio (zebrafish) ]

Gene ID: 325906, updated on 19-Jun-2021

Summary

Official Symbol
ttpaprovided by ZNC
Official Full Name
tocopherol (alpha) transfer proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4631
See related
Ensembl:ENSDARG00000027584
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:66361; wu:fd44e05
Orthologs
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Genomic context

See ttpa in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (26647472..26653148)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (26991838..26997514)
103 previous assembly Zv9 (GCF_000002035.4) 2 NC_007113.5 (26795642..26801318)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene U2 snRNP-associated SURP domain containing Neighboring gene microRNA 124-1 Neighboring gene aspartate beta-hydroxylase Neighboring gene inositol monophosphatase 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables lipid transfer activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables phosphatidylinositol bisphosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables vitamin E binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within central nervous system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within chordate embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in vitamin E metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in vitamin transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in late endosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
alpha-tocopherol transfer protein
Names
tocopherol (alpha) transfer protein (ataxia (Friedreich-like) with vitamin E deficiency)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199731.2NP_956025.2  alpha-tocopherol transfer protein

    Status: VALIDATED

    Source sequence(s)
    BX248497
    UniProtKB/TrEMBL
    B0S5J5
    Related
    ENSDARP00000117556.1, ENSDART00000145415.3
    Conserved Domains (2) summary
    smart01100
    Location:2670
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    pfam00650
    Location:97246
    CRAL_TRIO; CRAL/TRIO domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    26647472..26653148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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