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9830107B12Rik RIKEN cDNA 9830107B12 gene [ Mus musculus (house mouse) ]

Gene ID: 328829, updated on 8-Feb-2024

Summary

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Official Symbol
9830107B12Rikprovided by MGI
Official Full Name
RIKEN cDNA 9830107B12 geneprovided by MGI
Primary source
MGI:MGI:3608415
See related
Ensembl:ENSMUSG00000073386 AllianceGenome:MGI:3608415
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Trem5
Summary
Predicted to enable signaling receptor activity. Predicted to be active in cell surface. Is expressed in ear and embryo. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See 9830107B12Rik in Genome Data Viewer
Location:
17 C; 17 23.99 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (48410333..48453478, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (48099816..48146307, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30068 Neighboring gene RIKEN cDNA A730006G06 gene Neighboring gene predicted gene, 57493 Neighboring gene heat shock protein 1 (chaperonin) pseudogene 22 Neighboring gene RIKEN cDNA 1700067P10 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:48237942-48238143 Neighboring gene STARR-positive B cell enhancer ABC_E9956 Neighboring gene STARR-seq mESC enhancer starr_42745 Neighboring gene RIKEN cDNA A530064D06 gene Neighboring gene STARR-seq mESC enhancer starr_42746 Neighboring gene STARR-seq mESC enhancer starr_42747 Neighboring gene predicted gene, 52308 Neighboring gene Ewing sarcoma breakpoint region 1 pseudogene Neighboring gene triggering receptor expressed on myeloid cells 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Spatiotemporal regulation of GLI target genes in the mammalian limb bud. Lewandowski JP, et al. Dev Biol, 2015 Oct 1. PMID 26238476, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC328829
Names
triggering receptor expressed in myeloid cells 5
triggering receptor expressed on myeloid cells 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001177896.1 → NP_001171367.1  uncharacterized protein LOC328829 isoform 1 precursor

    See identical proteins and their annotated locations for NP_001171367.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AK079398, BY207169, EF646801
    Consensus CDS
    CCDS89112.1
    UniProtKB/TrEMBL
    A9Q7H1
    Related
    ENSMUSP00000156705.2, ENSMUST00000233337.2
    Conserved Domains (1) summary
    cd05716
    Location:28 → 105
    Ig_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar domains

  2. NM_001177897.1 → NP_001171368.1  uncharacterized protein LOC328829 isoform 3 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. This results in a shorter protein (isoform 3), compared to isoform 1.
    Source sequence(s)
    AK079398, AK137568, BY207169
    Consensus CDS
    CCDS89111.1
    UniProtKB/TrEMBL
    A0A3B2W4G3, Q3UV63
    Related
    ENSMUSP00000156923.2, ENSMUST00000233614.2
    Conserved Domains (2) summary
    smart00410
    Location:21 → 72
    IG_like; Immunoglobulin like
    pfam07686
    Location:20 → 72
    V-set; Immunoglobulin V-set domain

  3. NM_177824.4 → NP_808492.1  uncharacterized protein LOC328829 isoform 2 precursor

    See identical proteins and their annotated locations for NP_808492.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the coding region, which results in a frameshift, compared to variant 1. The resulting protein (isoform 2) has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AK079398, BY207169, MF597745
    Consensus CDS
    CCDS37645.1
    UniProtKB/TrEMBL
    D3Z5D6
    Related
    ENSMUSP00000070138.8, ENSMUST00000063481.9
    Conserved Domains (1) summary
    cd05716
    Location:28 → 105
    Ig_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar domains

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    48410333..48453478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317514.1 → XP_017173003.1  uncharacterized protein LOC328829 isoform X2

    UniProtKB/TrEMBL
    D3Z5D6
    Conserved Domains (1) summary
    cd05716
    Location:28 → 105
    Ig_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar domains

  2. XM_017317512.1 → XP_017173001.1  uncharacterized protein LOC328829 isoform X1

    UniProtKB/TrEMBL
    A9Q7H1
    Conserved Domains (1) summary
    cd05716
    Location:28 → 105
    Ig_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar domains

  3. XM_017317513.1 → XP_017173002.1  uncharacterized protein LOC328829 isoform X1

    UniProtKB/TrEMBL
    A9Q7H1
    Conserved Domains (1) summary
    cd05716
    Location:28 → 105
    Ig_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar domains
Nucleotide Protein Strain
Heading Accession and Version

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