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Rnf150 ring finger protein 150 [ Mus musculus (house mouse) ]

Gene ID: 330812, updated on 16-Oct-2021

Summary

Official Symbol
Rnf150provided by MGI
Official Full Name
ring finger protein 150provided by MGI
Primary source
MGI:MGI:2443860
See related
Ensembl:ENSMUSG00000047747
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Greul5; mKIAA1214; A630007N06Rik; C030044C12Rik
Expression
Broad expression in bladder adult (RPKM 4.6), cortex adult (RPKM 4.1) and 19 other tissues See more
Orthologs
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Genomic context

See Rnf150 in Genome Data Viewer
Location:
8; 8 C2
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (83589889..83817900)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (82863266..83091271)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (85387255..85615170)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 330 Neighboring gene predicted gene, 31545 Neighboring gene predicted gene, 46045 Neighboring gene zinc finger protein 235 pseudogene Neighboring gene predicted gene, 53443 Neighboring gene TBC1 domain family, member 9 Neighboring gene predicted gene, 53444 Neighboring gene predicted gene, 42027

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Clone Names

  • KIAA1214

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177378.4NP_796352.2  RING finger protein 150 precursor

    See identical proteins and their annotated locations for NP_796352.2

    Status: VALIDATED

    Source sequence(s)
    AC124757, AC132372, AC166939
    Consensus CDS
    CCDS40402.1
    UniProtKB/Swiss-Prot
    Q5DTZ6
    Related
    ENSMUSP00000077610.6, ENSMUST00000078525.7
    Conserved Domains (3) summary
    cd02122
    Location:45192
    PA_GRAIL_like; PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ...
    pfam13639
    Location:275318
    zf-RING_2; Ring finger domain
    cl11506
    Location:206231
    UPF0233; uncharacterized protein family (UPF0233)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    83589889..83817900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036154109.1XP_036010002.1  RING finger protein 150 isoform X4

    Conserved Domains (2) summary
    cd02122
    Location:45192
    PA_GRAIL_like; PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ...
    cl17238
    Location:289313
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
  2. XM_017312865.3XP_017168354.1  RING finger protein 150 isoform X1

    Conserved Domains (2) summary
    cd02122
    Location:45192
    PA_GRAIL_like; PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ...
    cd16668
    Location:289336
    RING-H2_GRAIL; RING finger, H2 subclass, found in the GRAIL transmembrane proteins family
  3. XM_017312866.3XP_017168355.1  RING finger protein 150 isoform X2

    Conserved Domains (2) summary
    cd02122
    Location:1102
    PA_GRAIL_like; PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ...
    cd16668
    Location:199246
    RING-H2_GRAIL; RING finger, H2 subclass, found in the GRAIL transmembrane proteins family
  4. XM_030243623.2XP_030099483.1  RING finger protein 150 isoform X3

    Conserved Domains (3) summary
    cd02122
    Location:1102
    PA_GRAIL_like; PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ...
    cd16668
    Location:186233
    RING-H2_GRAIL; RING finger, H2 subclass, found in the GRAIL transmembrane proteins family
    pfam13584
    Location:55169
    BatD; Oxygen tolerance
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